Last updated on 2026-07-26 01:52:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.1 | 7.06 | 103.92 | 110.98 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 3.0.1 | 5.85 | 160.87 | 166.72 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.0.1 | 12.00 | 431.37 | 443.37 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.0.1 | 171.68 | OK | |||
| r-devel-windows-x86_64 | 3.0.1 | 12.00 | 289.00 | 301.00 | OK | |
| r-patched-linux-x86_64 | 3.0.1 | 7.93 | 269.94 | 277.87 | OK | |
| r-release-linux-x86_64 | 3.0.1 | 7.10 | 136.88 | 143.98 | ERROR | |
| r-release-macos-arm64 | 3.0.1 | 2.00 | 109.00 | 111.00 | OK | |
| r-release-macos-x86_64 | 3.0.1 | 5.00 | 310.00 | 315.00 | OK | |
| r-release-windows-x86_64 | 3.0.1 | 10.00 | 297.00 | 307.00 | OK | |
| r-oldrel-macos-arm64 | 3.0.1 | 2.00 | 102.00 | 104.00 | OK | |
| r-oldrel-macos-x86_64 | 3.0.1 | 5.00 | 279.00 | 284.00 | OK | |
| r-oldrel-windows-x86_64 | 3.0.1 | 14.00 | 384.00 | 398.00 | OK |
Version: 3.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘rPDBapi-structural-bioinformatics.Rmd’ using rmarkdown
Quitting from rPDBapi-structural-bioinformatics.Rmd:1005-1014 [structure-search]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! RCSB search request failed with status : Server error: (500) Internal Server Error
Response content: {
"status" : 500,
"message" : "An unexpected error with status code '500' occurred: Internal Server Error",
"link" : "https://search.rcsb.org/redoc/index.html"
}
---
Backtrace:
▆
1. └─rPDBapi::perform_search(...)
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rPDBapi-structural-bioinformatics.Rmd' failed with diagnostics:
RCSB search request failed with status : Server error: (500) Internal Server Error
Response content: {
"status" : 500,
"message" : "An unexpected error with status code '500' occurred: Internal Server Error",
"link" : "https://search.rcsb.org/redoc/index.html"
}
--- failed re-building ‘rPDBapi-structural-bioinformatics.Rmd’
SUMMARY: processing the following file failed:
‘rPDBapi-structural-bioinformatics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘rPDBapi-structural-bioinformatics.Rmd’ using rmarkdown
Quitting from rPDBapi-structural-bioinformatics.Rmd:1175-1197 [query-search-variants]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! All retrieval attempts failed after 1 tries. Please check the search term, query type, and your network connection.
---
Backtrace:
▆
1. └─rPDBapi::query_search(search_term = "X-RAY DIFFRACTION", query_type = "ExpTypeQuery")
2. └─rPDBapi:::rpdbapi_abort(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rPDBapi-structural-bioinformatics.Rmd' failed with diagnostics:
All retrieval attempts failed after 1 tries. Please check the search term, query type, and your network connection.
--- failed re-building ‘rPDBapi-structural-bioinformatics.Rmd’
SUMMARY: processing the following file failed:
‘rPDBapi-structural-bioinformatics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64