Last updated on 2025-12-20 01:50:04 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 33.77 | 363.63 | 397.40 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 22.92 | 215.85 | 238.77 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 62.00 | 552.84 | 614.84 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 57.00 | 524.75 | 581.75 | ERROR | |
| r-devel-windows-x86_64 | 2.0.3 | 32.00 | 277.00 | 309.00 | OK | |
| r-patched-linux-x86_64 | 2.0.3 | 34.78 | 339.10 | 373.88 | OK | |
| r-release-linux-x86_64 | 2.0.3 | 34.29 | 340.02 | 374.31 | OK | |
| r-release-macos-arm64 | 2.0.3 | OK | ||||
| r-release-macos-x86_64 | 2.0.3 | 20.00 | 254.00 | 274.00 | OK | |
| r-release-windows-x86_64 | 2.0.3 | 32.00 | 275.00 | 307.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.3 | OK | ||||
| r-oldrel-macos-x86_64 | 2.0.3 | 18.00 | 200.00 | 218.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.3 | 42.00 | 384.00 | 426.00 | OK |
Version: 2.0.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Mihai Valcu <valcu@orn.mpg.de>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘rangeMapper-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rmap_save_map
> ### Title: Save maps
> ### Aliases: rmap_save_map
> ### rmap_save_map,rmapConnection,missing,missing,missing,missing,missing-method
> ### rmap_save_map,rmapConnection,missing,missing,missing,character,character-method
> ### rmap_save_map,rmapConnection,character,character,character,missing,character-method
> ### rmap_save_map,rmapConnection,character,character,character,character,character-method
> ### rmap_save_map,rmapConnection,function,character,character,missing,character-method
> ### rmap_save_map,rmapConnection,function,character,character,character,character-method
> ### rmap_save_map,rmapConnection,function,character,ANY,missing,character-method
> ### rmap_save_map,rmapConnection,function,character,ANY,character,character-method
> ### rmap_save_map,rmapConnection,character,Raster,missing,missing,character-method
>
> ### ** Examples
>
> require(rangeMapper)
> require(data.table)
Loading required package: data.table
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> con = rmap_connect()
> wrens = read_wrens()
> rmap_add_ranges(con, x = wrens, ID = 'sci_name')
> rmap_prepare(con, 'hex', cellsize=500)
--> Making hex canvas ...done.
(i) The canvas has 576 cells.
--> Processing 84 ranges ... --> Updating rmap_nfo & rmap_master tables ...done.
(i) Finished in 0.172s elapsed (0.175s cpu)
> rmap_save_map(con) # default is a species_richness map.
>
> rmap_add_bio(con, wrens, 'sci_name')
> rmap_save_map(con, fun='avg', src='wrens',v='body_mass', dst='avg_bodymass')
>
> rmap_save_subset(con,dst ='ss1', species_richness = 'species_richness > 10')
Error in `[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", :
attempt access index 5/5 in VECTOR_ELT
Calls: rmap_save_subset -> rmap_save_subset -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rangeMapper)
rangeMapper 2.0.3
>
> test_check("rangeMapper")
Saving _problems/test-3_subsets-28.R
Saving _problems/test-3_subsets-65.R
Saving _problems/test-3_subsets-75.R
Saving _problems/test-4_maps-7.R
Saving _problems/test-5_get-6.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 35 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-3_subsets.R:26:5'): rmap_save_subset returns TRUE ──────────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_true(rmap_save_subset(con, "s1", species_richness = "species_richness > 10")) at test-3_subsets.R:26:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rangeMapper::rmap_save_subset(con, "s1", species_richness = "species_richness > 10")
5. └─rangeMapper::rmap_save_subset(con, "s1", species_richness = "species_richness > 10")
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-3_subsets.R:61:5'): rmap_save_subset works with LIKE ───────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_true(rmap_save_subset(con, "s1", wrens = "female_tarsus BETWEEN 20 and 30 AND subspecies > 1 AND com_name LIKE \"%-wren%\" ")) at test-3_subsets.R:61:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rangeMapper::rmap_save_subset(con, "s1", wrens = "female_tarsus BETWEEN 20 and 30 AND subspecies > 1 AND com_name LIKE \"%-wren%\" ")
5. └─rangeMapper::rmap_save_subset(con, "s1", wrens = "female_tarsus BETWEEN 20 and 30 AND subspecies > 1 AND com_name LIKE \"%-wren%\" ")
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-3_subsets.R:71:5'): rmap_save_subset works with where > (select .... ) ──
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_true(rmap_save_subset(con, "s1", wrens = "clutch_size > (SELECT avg(clutch_size) from wrens)")) at test-3_subsets.R:71:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > (SELECT avg(clutch_size) from wrens)")
5. └─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > (SELECT avg(clutch_size) from wrens)")
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-4_maps.R:7:1'): (code run outside of `test_that()`) ────────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > 2") at test-4_maps.R:7:1
2. └─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > 2")
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-5_get.R:6:1'): (code run outside of `test_that()`) ─────────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(con, dst = "ss1", species_richness = "species_richness > 10") at test-5_get.R:6:1
2. └─rangeMapper::rmap_save_subset(con, dst = "ss1", species_richness = "species_richness > 10")
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 35 ]
Error:
! Test failures.
Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Case_studies_Valcu_et_al_2012.Rmd’ using rmarkdown
Quitting from Case_studies_Valcu_et_al_2012.Rmd:115-125 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(...)
2. └─rangeMapper::rmap_save_subset(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Case_studies_Valcu_et_al_2012.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘Case_studies_Valcu_et_al_2012.Rmd’
--- re-building ‘rangeMapper.Rmd’ using rmarkdown
Quitting from rangeMapper.Rmd:71-73 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(con, "sset1", species_richness = "species_richness > 10")
2. └─rangeMapper::rmap_save_subset(con, "sset1", species_richness = "species_richness > 10")
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rangeMapper.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘rangeMapper.Rmd’
SUMMARY: processing the following files failed:
‘Case_studies_Valcu_et_al_2012.Rmd’ ‘rangeMapper.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘rangeMapper-Ex.R’ failed
The error most likely occurred in:
> ### Name: rmap_save_map
> ### Title: Save maps
> ### Aliases: rmap_save_map
> ### rmap_save_map,rmapConnection,missing,missing,missing,missing,missing-method
> ### rmap_save_map,rmapConnection,missing,missing,missing,character,character-method
> ### rmap_save_map,rmapConnection,character,character,character,missing,character-method
> ### rmap_save_map,rmapConnection,character,character,character,character,character-method
> ### rmap_save_map,rmapConnection,function,character,character,missing,character-method
> ### rmap_save_map,rmapConnection,function,character,character,character,character-method
> ### rmap_save_map,rmapConnection,function,character,ANY,missing,character-method
> ### rmap_save_map,rmapConnection,function,character,ANY,character,character-method
> ### rmap_save_map,rmapConnection,character,Raster,missing,missing,character-method
>
> ### ** Examples
>
> require(rangeMapper)
> require(data.table)
Loading required package: data.table
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> con = rmap_connect()
> wrens = read_wrens()
> rmap_add_ranges(con, x = wrens, ID = 'sci_name')
> rmap_prepare(con, 'hex', cellsize=500)
--> Making hex canvas ...done.
(i) The canvas has 576 cells.
--> Processing 84 ranges ... --> Updating rmap_nfo & rmap_master tables ...done.
(i) Finished in 0.896s elapsed (0.513s cpu)
> rmap_save_map(con) # default is a species_richness map.
>
> rmap_add_bio(con, wrens, 'sci_name')
> rmap_save_map(con, fun='avg', src='wrens',v='body_mass', dst='avg_bodymass')
>
> rmap_save_subset(con,dst ='ss1', species_richness = 'species_richness > 10')
Error in `[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", :
attempt access index 5/5 in VECTOR_ELT
Calls: rmap_save_subset -> rmap_save_subset -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [32s/62s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rangeMapper)
rangeMapper 2.0.3
>
> test_check("rangeMapper")
Saving _problems/test-3_subsets-28.R
Saving _problems/test-3_subsets-65.R
Saving _problems/test-3_subsets-75.R
Saving _problems/test-4_maps-7.R
Saving _problems/test-5_get-6.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 35 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-3_subsets.R:26:5'): rmap_save_subset returns TRUE ──────────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_true(rmap_save_subset(con, "s1", species_richness = "species_richness > 10")) at test-3_subsets.R:26:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rangeMapper::rmap_save_subset(con, "s1", species_richness = "species_richness > 10")
5. └─rangeMapper::rmap_save_subset(con, "s1", species_richness = "species_richness > 10")
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-3_subsets.R:61:5'): rmap_save_subset works with LIKE ───────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_true(rmap_save_subset(con, "s1", wrens = "female_tarsus BETWEEN 20 and 30 AND subspecies > 1 AND com_name LIKE \"%-wren%\" ")) at test-3_subsets.R:61:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rangeMapper::rmap_save_subset(con, "s1", wrens = "female_tarsus BETWEEN 20 and 30 AND subspecies > 1 AND com_name LIKE \"%-wren%\" ")
5. └─rangeMapper::rmap_save_subset(con, "s1", wrens = "female_tarsus BETWEEN 20 and 30 AND subspecies > 1 AND com_name LIKE \"%-wren%\" ")
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-3_subsets.R:71:5'): rmap_save_subset works with where > (select .... ) ──
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_true(rmap_save_subset(con, "s1", wrens = "clutch_size > (SELECT avg(clutch_size) from wrens)")) at test-3_subsets.R:71:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > (SELECT avg(clutch_size) from wrens)")
5. └─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > (SELECT avg(clutch_size) from wrens)")
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-4_maps.R:7:1'): (code run outside of `test_that()`) ────────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > 2") at test-4_maps.R:7:1
2. └─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > 2")
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-5_get.R:6:1'): (code run outside of `test_that()`) ─────────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(con, dst = "ss1", species_richness = "species_richness > 10") at test-5_get.R:6:1
2. └─rangeMapper::rmap_save_subset(con, dst = "ss1", species_richness = "species_richness > 10")
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 35 ]
Error:
! Test failures.
Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Case_studies_Valcu_et_al_2012.Rmd’ using rmarkdown
Quitting from Case_studies_Valcu_et_al_2012.Rmd:115-125 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(...)
2. └─rangeMapper::rmap_save_subset(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Case_studies_Valcu_et_al_2012.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘Case_studies_Valcu_et_al_2012.Rmd’
--- re-building ‘rangeMapper.Rmd’ using rmarkdown
Quitting from rangeMapper.Rmd:71-73 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(con, "sset1", species_richness = "species_richness > 10")
2. └─rangeMapper::rmap_save_subset(con, "sset1", species_richness = "species_richness > 10")
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rangeMapper.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘rangeMapper.Rmd’
SUMMARY: processing the following files failed:
‘Case_studies_Valcu_et_al_2012.Rmd’ ‘rangeMapper.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘rangeMapper-Ex.R’ failed
The error most likely occurred in:
> ### Name: rmap_save_map
> ### Title: Save maps
> ### Aliases: rmap_save_map
> ### rmap_save_map,rmapConnection,missing,missing,missing,missing,missing-method
> ### rmap_save_map,rmapConnection,missing,missing,missing,character,character-method
> ### rmap_save_map,rmapConnection,character,character,character,missing,character-method
> ### rmap_save_map,rmapConnection,character,character,character,character,character-method
> ### rmap_save_map,rmapConnection,function,character,character,missing,character-method
> ### rmap_save_map,rmapConnection,function,character,character,character,character-method
> ### rmap_save_map,rmapConnection,function,character,ANY,missing,character-method
> ### rmap_save_map,rmapConnection,function,character,ANY,character,character-method
> ### rmap_save_map,rmapConnection,character,Raster,missing,missing,character-method
>
> ### ** Examples
>
> require(rangeMapper)
> require(data.table)
Loading required package: data.table
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> con = rmap_connect()
> wrens = read_wrens()
> rmap_add_ranges(con, x = wrens, ID = 'sci_name')
> rmap_prepare(con, 'hex', cellsize=500)
--> Making hex canvas ...done.
(i) The canvas has 576 cells.
--> Processing 84 ranges ... --> Updating rmap_nfo & rmap_master tables ...done.
(i) Finished in 0.450s elapsed (0.442s cpu)
> rmap_save_map(con) # default is a species_richness map.
>
> rmap_add_bio(con, wrens, 'sci_name')
> rmap_save_map(con, fun='avg', src='wrens',v='body_mass', dst='avg_bodymass')
>
> rmap_save_subset(con,dst ='ss1', species_richness = 'species_richness > 10')
Error in `[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", :
attempt access index 5/5 in VECTOR_ELT
Calls: rmap_save_subset -> rmap_save_subset -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [29s/33s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rangeMapper)
rangeMapper 2.0.3
>
> test_check("rangeMapper")
Saving _problems/test-3_subsets-28.R
Saving _problems/test-3_subsets-65.R
Saving _problems/test-3_subsets-75.R
Saving _problems/test-4_maps-7.R
Saving _problems/test-5_get-6.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 35 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-3_subsets.R:26:5'): rmap_save_subset returns TRUE ──────────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_true(rmap_save_subset(con, "s1", species_richness = "species_richness > 10")) at test-3_subsets.R:26:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rangeMapper::rmap_save_subset(con, "s1", species_richness = "species_richness > 10")
5. └─rangeMapper::rmap_save_subset(con, "s1", species_richness = "species_richness > 10")
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-3_subsets.R:61:5'): rmap_save_subset works with LIKE ───────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_true(rmap_save_subset(con, "s1", wrens = "female_tarsus BETWEEN 20 and 30 AND subspecies > 1 AND com_name LIKE \"%-wren%\" ")) at test-3_subsets.R:61:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rangeMapper::rmap_save_subset(con, "s1", wrens = "female_tarsus BETWEEN 20 and 30 AND subspecies > 1 AND com_name LIKE \"%-wren%\" ")
5. └─rangeMapper::rmap_save_subset(con, "s1", wrens = "female_tarsus BETWEEN 20 and 30 AND subspecies > 1 AND com_name LIKE \"%-wren%\" ")
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-3_subsets.R:71:5'): rmap_save_subset works with where > (select .... ) ──
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_true(rmap_save_subset(con, "s1", wrens = "clutch_size > (SELECT avg(clutch_size) from wrens)")) at test-3_subsets.R:71:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > (SELECT avg(clutch_size) from wrens)")
5. └─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > (SELECT avg(clutch_size) from wrens)")
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-4_maps.R:7:1'): (code run outside of `test_that()`) ────────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > 2") at test-4_maps.R:7:1
2. └─rangeMapper::rmap_save_subset(con, "s1", wrens = "clutch_size > 2")
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-5_get.R:6:1'): (code run outside of `test_that()`) ─────────────
Error in ``[.data.table`(W, type == "map", `:=`(joinCall, paste("JOIN", name, "ON", "c.cell_id = ", name, ".cell_id", collapse = "")), by = pk)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─rangeMapper::rmap_save_subset(con, dst = "ss1", species_richness = "species_richness > 10") at test-5_get.R:6:1
2. └─rangeMapper::rmap_save_subset(con, dst = "ss1", species_richness = "species_richness > 10")
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 35 ]
Error:
! Test failures.
Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc