Last updated on 2025-05-17 01:51:48 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| alabama | 2 | 11 | |
| anoint | 13 | ||
| condMVNorm | 13 | ||
| crrstep | 13 | ||
| dfoptim | 2 | 11 | |
| DSBayes | 2 | 11 | |
| FastHamming | 13 | ||
| features | 13 | ||
| resilience | 1 | 12 | |
| SQUAREM | 13 | ||
| turboEM | 13 |
Current CRAN status: NOTE: 2, OK: 11
Version: 2023.1.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Ravi Varadhan <ravi.varadhan@jhu.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Ravi",
family = "Varadhan",
role = c("aut", "cre"),
email = "ravi.varadhan@jhu.edu",
comment = "with contributions from Gabor Grothendieck")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2023.1.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Ravi Varadhan <ravi.varadhan@jhu.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Ravi",
family = "Varadhan",
role = c("aut", "cre"),
email = "ravi.varadhan@jhu.edu"),
person(given = c("Johns", "Hopkins"),
family = "University"),
person(given = c("Hans", "W."),
family = "Borchers",
role = "aut"),
person(given = c("ABB", "Corporate"),
family = "Research"),
person(given = "Vincent",
family = "Bechard",
role = "aut"),
person(given = "HEC",
family = "Montreal",
comment = "Montreal University"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 2023.1.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Ravi Varadhan <ravi.varadhan@jhu.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Ravi",
family = "Varadhan",
role = c("aut", "cre"),
email = "ravi.varadhan@jhu.edu"),
person(given = "Wenliang",
family = "Yao",
role = "aut"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 2024.1.2
Check: examples
Result: ERROR
Running examples in ‘resilience-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: prepost
> ### Title: Identifying Predictors of Resilience to Stressors in Single-Arm
> ### Studies of Pre-Post Change
> ### Aliases: prepost
> ### Keywords: pre-post resilience
>
> ### ** Examples
>
> data(tkr)
>
> names(tkr.dat)
[1] "gender" "age" "bmi" "smoker" "post.Y" "pre.Y"
> dim(tkr.dat)
[1] 900 6
>
> # pre-post change regression
> ans1 <- prepost(post.Y ~ pre.Y + I(age-mean(age)) + I((age - mean(age))^2) +
+ bmi + gender + as.factor(smoker), data=tkr.dat, k=c(1.2, 1.5), nboot=200)
> print(ans1)
$naive.beta
Estimate Std. Error t value Pr(>|t|)
(Intercept) 19.7178591032 2.854492335 6.9076588 1.191603e-11
pre.Y -0.5979748068 0.030782785 -19.4256242 1.992061e-66
I(age - mean(age)) 0.0020523577 0.048759433 0.0420915 9.664389e-01
I((age - mean(age))^2) 0.0008103525 0.005131442 0.1579190 8.745704e-01
bmi -0.1790450020 0.052487064 -3.4112215 6.874338e-04
genderMale 1.3079861675 0.602779392 2.1699252 3.037969e-02
as.factor(smoker)no 1.3707020605 1.583720839 0.8654947 3.870916e-01
as.factor(smoker)yes -2.2213288479 2.389996267 -0.9294277 3.530179e-01
$corrected.beta
k=1.2 k=1.5
(Intercept) 19.717859103 19.717859103
pre.Y -0.148764227 -0.302731778
I(age - mean(age)) 0.094717733 0.062956547
I((age - mean(age))^2) 0.004770432 0.003413109
bmi -0.040613971 -0.088061399
genderMale 0.426967826 0.728938087
as.factor(smoker)no 2.601359096 2.179549688
as.factor(smoker)yes -0.844440110 -1.316370638
$CI
$CI$`k=1.2`
lower upper
(Intercept) 13.566443075 24.70848641
pre.Y -0.186422094 -0.10651508
I(age - mean(age)) -0.021571059 0.20086843
I((age - mean(age))^2) -0.003919786 0.01455822
bmi -0.179276940 0.07124637
genderMale -0.863793423 1.71535754
as.factor(smoker)no -0.402007517 5.46378254
as.factor(smoker)yes -5.493022682 5.64693439
$CI$`k=1.5`
lower upper
(Intercept) 14.275419373 24.66134941
pre.Y -0.350859811 -0.24057499
I(age - mean(age)) -0.047620194 0.17657288
I((age - mean(age))^2) -0.005684093 0.01281128
bmi -0.179925426 0.01655067
genderMale -0.581780323 2.01750936
as.factor(smoker)no -0.764658212 4.57316424
as.factor(smoker)yes -7.358449526 3.70024054
>
> # Post regression
> ans2 <- prepost(post.Y ~ pre.Y + I(age-mean(age)) + I((age - mean(age))^2) +
+ bmi + gender + as.factor(smoker), data=tkr.dat,
+ k=c(1.2, 1.5), change=FALSE, nboot=200, boot.method="norm")
> print(ans2)
$naive.beta
Estimate Std. Error t value Pr(>|t|)
(Intercept) 19.7178591032 2.854492335 6.9076588 1.191603e-11
pre.Y 0.4020251932 0.030782785 13.0600658 1.000121e-34
I(age - mean(age)) 0.0020523577 0.048759433 0.0420915 9.664389e-01
I((age - mean(age))^2) 0.0008103525 0.005131442 0.1579190 8.745704e-01
bmi -0.1790450020 0.052487064 -3.4112215 6.874338e-04
genderMale 1.3079861675 0.602779392 2.1699252 3.037969e-02
as.factor(smoker)no 1.3707020605 1.583720839 0.8654947 3.870916e-01
as.factor(smoker)yes -2.2213288479 2.389996267 -0.9294277 3.530179e-01
$corrected.beta
k=1.2 k=1.5
(Intercept) 19.717859103 19.717859103
pre.Y -0.148764227 -0.302731778
I(age - mean(age)) 0.094717733 0.062956547
I((age - mean(age))^2) 0.004770432 0.003413109
bmi -0.040613971 -0.088061399
genderMale 0.426967826 0.728938087
as.factor(smoker)no 2.601359096 2.179549688
as.factor(smoker)yes -0.844440110 -1.316370638
$CI
$CI$`k=1.2`
lower upper
(Intercept) 14.879768085 24.65604332
pre.Y -0.196698501 -0.11251696
I(age - mean(age)) -0.016716466 0.20280134
I((age - mean(age))^2) -0.005849081 0.01614683
bmi -0.169832367 0.08743711
genderMale -0.967918404 1.75908126
as.factor(smoker)no -0.402889973 5.67579504
as.factor(smoker)yes -6.053389310 5.33789569
$CI$`k=1.5`
lower upper
(Intercept) 14.473369322 24.94067309
pre.Y -0.352511249 -0.25589100
I(age - mean(age)) -0.040768921 0.16346851
I((age - mean(age))^2) -0.006209394 0.01401293
bmi -0.199228692 0.01907463
genderMale -0.522350930 1.90559802
as.factor(smoker)no -0.791587245 5.07510384
as.factor(smoker)yes -6.080597501 3.86144146
>
> # without any covariates
> ans3 <- prepost(post.Y ~ pre.Y, data=tkr.dat, k=c(1.2, 2.0), nboot=200)
Error in { :
task 2 failed - "creation of server socket failed: port 11200 cannot be opened"
Calls: prepost -> %dopar% -> <Anonymous>
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 13
Version: 2021.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Ravi Varadhan <ravi.varadhan@jhu.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Ravi",
family = "Varadhan",
role = c("aut", "cre"),
email = "ravi.varadhan@jhu.edu")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2021.1
Check: Rd files
Result: NOTE
checkRd: (-1) fpiter.Rd:55-58: Lost braces
55 | \code{tol}{ - a small, positive scalar that determines when iterations
| ^
checkRd: (-1) fpiter.Rd:60-61: Lost braces
60 | \code{maxiter}{ - an integer denoting the maximum limit on the number of
| ^
checkRd: (-1) fpiter.Rd:63-65: Lost braces
63 | \code{trace}{ - a logical variable denoting whether some of the intermediate
| ^
checkRd: (-1) fpiter.Rd:67-70: Lost braces
67 | \code{intermed}}{ - a logical variable denoting whether the intermediate
| ^
checkRd: (-1) squarem.Rd:134: Lost braces
134 | along with the corresponding log-likelihood value. When the code{objfn} is not specified it will return the fixed-point residual instead of the objective function values.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2021.1
Check: for unstated dependencies in ‘demo’
Result: NOTE
'library' or 'require' call not declared from: ‘interval’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: OK: 13