Last updated on 2026-06-07 02:50:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.0 | 2.53 | 177.84 | 180.37 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.0 | 2.39 | 108.24 | 110.63 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.7.0 | 282.18 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.7.0 | 354.13 | OK | |||
| r-devel-windows-x86_64 | 0.7.0 | 6.00 | 230.00 | 236.00 | OK | |
| r-patched-linux-x86_64 | 0.7.0 | 4.22 | 165.90 | 170.12 | OK | |
| r-release-linux-x86_64 | 0.7.0 | 3.14 | 165.00 | 168.14 | OK | |
| r-release-macos-arm64 | 0.7.0 | 1.00 | 81.00 | 82.00 | OK | |
| r-release-macos-x86_64 | 0.7.0 | 2.00 | 405.00 | 407.00 | OK | |
| r-release-windows-x86_64 | 0.7.0 | 6.00 | 232.00 | 238.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.0 | 1.00 | 90.00 | 91.00 | OK | |
| r-oldrel-macos-x86_64 | 0.7.0 | 2.00 | 528.00 | 530.00 | OK | |
| r-oldrel-windows-x86_64 | 0.7.0 | 7.00 | 278.00 | 285.00 | OK |
Version: 0.7.0
Check: examples
Result: ERROR
Running examples in ‘simulist-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sim_contacts
> ### Title: Simulate contacts for an infectious disease outbreak
> ### Aliases: sim_contacts
>
> ### ** Examples
>
> # quickly simulate contact tracing data using the function defaults
> contacts <- sim_contacts()
> head(contacts)
from to age sex date_first_contact
1 Sarah Donnelly Mariah Gray 58 f 2022-12-27
2 Sarah Donnelly Mickenzie Cunniff 29 f 2022-12-30
3 Mickenzie Cunniff Malinda Kelley 24 f 2023-01-12
4 Mickenzie Cunniff Ulises Garcia 42 m 2023-01-11
5 Mickenzie Cunniff Sarah Carlson 48 f 2023-01-09
6 Malinda Kelley Fallon Estrada 76 f 2023-01-11
date_last_contact was_case status
1 2023-01-04 FALSE under_followup
2 2023-01-06 TRUE case
3 2023-01-18 TRUE case
4 2023-01-18 FALSE lost_to_followup
5 2023-01-17 FALSE under_followup
6 2023-01-18 TRUE case
>
> # to simulate more realistic contact tracing data load epiparameters from
> # {epiparameter}
> library(epiparameter)
Warning in file() :
cannot open file '/tmp/RtmppvFX4x/Rf10c08db3771dc': No space left on device
Error: package or namespace load failed for ‘epiparameter’:
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘age-strat-risks.Rmd’ using rmarkdown
Quitting from age-strat-risks.Rmd:35-38 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'epiparameter':
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
---
Backtrace:
▆
1. └─base::library(epiparameter)
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'age-strat-risks.Rmd' failed with diagnostics:
package or namespace load failed for 'epiparameter':
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
--- failed re-building ‘age-strat-risks.Rmd’
--- re-building ‘age-struct-pop.Rmd’ using rmarkdown
--- finished re-building ‘age-struct-pop.Rmd’
--- re-building ‘design-principles.Rmd’ using rmarkdown
--- finished re-building ‘design-principles.Rmd’
--- re-building ‘reporting-delays-truncation.Rmd’ using rmarkdown
Quitting from reporting-delays-truncation.Rmd:32-39 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'epiparameter':
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
---
Backtrace:
▆
1. └─base::library(epiparameter)
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'reporting-delays-truncation.Rmd' failed with diagnostics:
package or namespace load failed for 'epiparameter':
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
--- failed re-building ‘reporting-delays-truncation.Rmd’
--- re-building ‘simulist.Rmd’ using rmarkdown
--- finished re-building ‘simulist.Rmd’
--- re-building ‘time-varying-cfr.Rmd’ using rmarkdown
--- finished re-building ‘time-varying-cfr.Rmd’
--- re-building ‘vis-linelist.Rmd’ using rmarkdown
--- finished re-building ‘vis-linelist.Rmd’
--- re-building ‘wrangling-linelist.Rmd’ using rmarkdown
--- finished re-building ‘wrangling-linelist.Rmd’
SUMMARY: processing the following files failed:
‘age-strat-risks.Rmd’ ‘reporting-delays-truncation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc