Last updated on 2026-10-24 01:51:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.27 | 14.90 | 118.54 | 133.44 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.27 | 10.88 | 81.01 | 91.89 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.27 | 14.00 | 101.56 | 115.56 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.27 | 10.00 | 82.30 | 92.30 | OK | |
| r-devel-windows-x86_64 | 1.1.27 | 17.00 | 127.00 | 144.00 | OK | |
| r-patched-linux-x86_64 | 1.1.27 | 13.99 | 111.14 | 125.13 | OK | |
| r-release-linux-x86_64 | 1.1.27 | 14.04 | 111.23 | 125.27 | OK | |
| r-release-macos-arm64 | 1.1.27 | 4.00 | 31.00 | 35.00 | OK | |
| r-release-macos-x86_64 | 1.1.27 | 11.00 | 145.00 | 156.00 | OK | |
| r-release-windows-x86_64 | 1.1.27 | 17.00 | 117.00 | 134.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.27 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.27 | 10.00 | 123.00 | 133.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.27 | 23.00 | 149.00 | 172.00 | OK |
Version: 1.1.27
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Dan Chaltiel <dan.chaltiel@gustaveroussy.fr>’
Found the following (possibly) invalid URLs:
URL:
From: inst/doc/surrosurv.pdf
Message: Empty URL
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1.27
Check: examples
Result: ERROR
Running examples in ‘surrosurv-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: poissonize
> ### Title: Transform survival data for fitting a Poisson model
> ### Aliases: poissonize plotsson
> ### Keywords: Poisson Survival data
>
> ### ** Examples
>
> ################################################################################
> # Example 1 - KIDNEY data #
> ################################################################################
> library(survival)
> data(kidney)
Warning in data(kidney) : data set ‘kidney’ not found
> kidney <- kidney[1:(nrow(kidney)/2)*2,]
> head(kidney)
id time status age sex disease frail
2 1 16 1 28 1 Other 2.3
4 2 13 0 48 2 GN 1.9
6 3 28 1 32 1 Other 1.2
8 4 318 1 32 2 Other 0.5
10 5 12 1 10 1 Other 1.5
12 6 245 1 17 2 Other 1.1
>
> par(mfrow=c(1, 3))
> for (int in c(50, 20, 10)) {
+ head(wdata1 <- poissonize(kidney, interval.width = int,
+ factors = c('disease'), compress = FALSE))
+ head(wdata2 <- poissonize(kidney, interval.width = int,
+ factors = c('disease'), compress = TRUE))
+
+ fitcox <- (coxph(Surv(time, status) ~ disease, data = kidney))
+ fitpoi1 <- glm(event ~ -1 + interval + disease + offset(log(time)),
+ data = wdata1, family = 'poisson')
+ fitpoi2 <- glm(m ~ -1 + interval + offset(log(Rt)) + disease,
+ data = wdata2, family = 'poisson')
+ cox.base <- basehaz(fitcox, centered = FALSE)
+ plot(stepfun(cox.base$time[-nrow(cox.base)], exp(-cox.base$hazard)),
+ ylim = 0:1, xlim = c(0, max(cox.base$time)),
+ do.points = FALSE, verticals = FALSE, xaxs = 'i',
+ main = paste0('KIDNEY data set\nInterval width = ', int),
+ xlab = 'Time', ylab = 'Survival probability')
+ plotsson(fitpoi1, 'Surv', add = TRUE, col = 2, lty = 2)
+ plotsson(fitpoi2, 'Surv', add = TRUE, col = 3, lty = 3)
+ legend('topright', col = 1:3, lty = 1:3,
+ legend = c('Breslow (Cox)', 'Poisson',
+ 'Poisson (compressed dataset)'))
+ }
Error in a$specials[[i]] : subscript out of bounds
Calls: basehaz ... survfit.coxph -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc