CRAN Package Check Results for Maintainer ‘Thomas Lumley <t.lumley at auckland.ac.nz>’

Last updated on 2025-05-09 01:50:47 CEST.

Package ERROR NOTE OK
biglm 5 8
bigQF 13
DHBins 2 11
hextri 2 11
leaps 2 11
mitools 13
rimu 13
rmeta 2 11
survey 1 8 4
svylme 2 11
svyVGAM 6 7
xkcdcolors 2 11

Package biglm

Current CRAN status: NOTE: 5, OK: 8

Version: 0.9-3
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.9-3
Check: R code for possible problems
Result: NOTE Found the following calls to data() loading into the global environment: File ‘biglm/R/bigglm.R’: data(reset = TRUE) data(reset = FALSE) See section ‘Good practice’ in ‘?data’. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Package bigQF

Current CRAN status: NOTE: 13

Version: 1.6
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.6
Check: Rd files
Result: NOTE checkRd: (-1) pQF.Rd:30: Lost braces; missing escapes or markup? 30 | When \code{M} is not square, a randomised estimator for the trace of \code{crossprod(M)^2} is used. This is the sample size. When \code{M} is of \code{"matrixfree"} and does not include the trace of {crossprod(M)} as a component, this sample size will also be used to compute that. See Hutchinson reference. } | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package DHBins

Current CRAN status: NOTE: 2, OK: 11

Version: 1.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. The Description field contains or Regional Councils. The preprint Lumley (2019) <arXiv:1912.04435> is Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package hextri

Current CRAN status: NOTE: 2, OK: 11

Version: 0.9.17
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz", comment = "Jie Fu Yu made a prototype") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package leaps

Current CRAN status: NOTE: 2, OK: 11

Version: 3.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Thomas", "Lumley", "based", "on", "Fortran", "code", "by", "Alan"), family = "Miller", role = "aut"), person(given = "Thomas", family = "Lumley", role = "cre", email = "t.lumley@auckland.ac.nz")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package mitools

Current CRAN status: NOTE: 13

Version: 2.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.4
Check: Rd files
Result: NOTE checkRd: (-1) PV.Rd:14: Lost braces 14 | plausible value in turn; with code{rewrite=FALSE} a new data set is | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package rimu

Current CRAN status: OK: 13

Package rmeta

Current CRAN status: NOTE: 2, OK: 11

Version: 3.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package survey

Current CRAN status: ERROR: 1, NOTE: 8, OK: 4

Additional issues

gcc-UBSAN

Version: 4.4-2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘"Thomas Lumley" <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Thomas", family = "Lumley", role = "aut"), person(given = "Peter", family = "Gao", role = "aut"), person(given = "Ben", family = "Schneider", role = "aut"), person(given = "\"Thomas", family = "Lumley\"", role = "cre", email = "t.lumley@auckland.ac.nz")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 4.4-2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: svycoplot.Rd: xyplot svycoxph.Rd: coxph, predict.coxph Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 4.4-2
Check: tests
Result: ERROR Running ‘3stage2phase.R’ [2s/3s] Running ‘DBIcheck.R’ [1s/2s] Running the tests in ‘tests/DBIcheck.R’ failed. Complete output: > > library(survey) Loading required package: grid Loading required package: Matrix Loading required package: survival Attaching package: 'survey' The following object is masked from 'package:graphics': dotchart > library(RSQLite) Error in library(RSQLite) : there is no package called 'RSQLite' Execution halted Flavor: r-release-macos-x86_64

Version: 4.4-2
Check: installed package size
Result: NOTE installed size is 6.8Mb sub-directories of 1Mb or more: R 2.1Mb doc 1.5Mb libs 2.0Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package svylme

Current CRAN status: NOTE: 2, OK: 11

Version: 1.5-1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ The Description field contains likelihood, as described in Lumley & Huang (2023) <arXiv:2311.13048>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package svyVGAM

Current CRAN status: NOTE: 6, OK: 7

Version: 1.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: svy_vglm.Rd: vglm, svydesign, svrepdesign Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package xkcdcolors

Current CRAN status: NOTE: 2, OK: 11

Version: 1.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Thomas", family = "Lumley", role = c("aut", "cre"), email = "t.lumley@auckland.ac.nz"), person(given = c("using", "data", "from", "Randall"), family = "Munroe", role = "aut"), person(given = c("about", "2.2e5", "survey"), family = "participants", role = "aut")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc