Last updated on 2026-06-07 02:50:38 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.15 | 48.44 | 481.41 | 529.85 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.15 | 33.90 | 326.28 | 360.18 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.15 | 83.00 | 753.11 | 836.11 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.15 | 83.00 | 786.65 | 869.65 | OK | |
| r-devel-windows-x86_64 | 1.1.15 | 47.00 | 445.00 | 492.00 | OK | |
| r-patched-linux-x86_64 | 1.1.15 | 46.41 | 464.16 | 510.57 | OK | |
| r-release-linux-x86_64 | 1.1.15 | 43.14 | 427.95 | 471.09 | ERROR | |
| r-release-macos-arm64 | 1.1.15 | 13.00 | 132.00 | 145.00 | OK | |
| r-release-macos-x86_64 | 1.1.15 | 32.00 | 457.00 | 489.00 | OK | |
| r-release-windows-x86_64 | 1.1.15 | 47.00 | 445.00 | 492.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.15 | 13.00 | 121.00 | 134.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.15 | 31.00 | 414.00 | 445.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.15 | 65.00 | 590.00 | 655.00 | OK |
Version: 1.1.15
Check: examples
Result: ERROR
Running examples in ‘tepr-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: retrievechrom
> ### Title: Retrieve chromosome lengths and information for a specified
> ### genome.
> ### Aliases: retrievechrom
>
> ### ** Examples
>
> # This example requires an internet connection to the UCSC database
> hg19_chroms <- retrievechrom(genomename = "hg19", verbose = TRUE)
Retrieving chromosome lengths
Error in retrievechrom(genomename = "hg19", verbose = TRUE) :
[tepr] Error: Genome not found.
'hg19' not found via SeqinfoForUCSCGenome.
Check spelling or UCSC availability.
Alternatively, provide 'chromtab' directly.
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.1.15
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tepr)
>
> test_check("tepr")
Saving _problems/test-preprocessing-blacklisthighmap-10.R
Saving _problems/test-preprocessing-createtablescores-11.R
Saving _problems/test-preprocessing-24.R
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 28 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-preprocessing-blacklisthighmap.R:10:1'): (code run outside of `test_that()`) ──
Error in `retrievechrom(genomename, verbose = FALSE, filterchrom = FALSE)`:
[tepr] Error: Genome not found.
'hg38' not found via SeqinfoForUCSCGenome.
Check spelling or UCSC availability.
Alternatively, provide 'chromtab' directly.
Backtrace:
▆
1. └─tepr::retrievechrom(genomename, verbose = FALSE, filterchrom = FALSE) at test-preprocessing-blacklisthighmap.R:10:1
── Error ('test-preprocessing-createtablescores.R:11:1'): (code run outside of `test_that()`) ──
Error in `retrievechrom(genomename, verbose = FALSE)`:
[tepr] Error: Genome not found.
'hg38' not found via SeqinfoForUCSCGenome.
Check spelling or UCSC availability.
Alternatively, provide 'chromtab' directly.
Backtrace:
▆
1. └─tepr::retrievechrom(genomename, verbose = FALSE) at test-preprocessing-createtablescores.R:11:1
── Error ('test-preprocessing.R:23:1'): (code run outside of `test_that()`) ────
Error in `retrievechrom(genomename, verbose)`:
[tepr] Error: Genome not found.
'hg38' not found via SeqinfoForUCSCGenome.
Check spelling or UCSC availability.
Alternatively, provide 'chromtab' directly.
Backtrace:
▆
1. └─tepr::preprocessing(...) at test-preprocessing.R:23:1
2. └─tepr:::.createbedgraphlistwmean(...)
3. └─tepr::blacklisthighmap(...)
4. └─tepr::retrievechrom(genomename, verbose)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 28 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.15
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tepr)
>
> test_check("tepr")
Saving _problems/test-preprocessing-blacklisthighmap-10.R
Saving _problems/test-preprocessing-createtablescores-11.R
Saving _problems/test-preprocessing-24.R
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 28 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-preprocessing-blacklisthighmap.R:10:1'): (code run outside of `test_that()`) ──
Error in `retrievechrom(genomename, verbose = FALSE, filterchrom = FALSE)`:
[tepr] Error: Genome not found.
'hg38' not found via SeqinfoForUCSCGenome.
Check spelling or UCSC availability.
Alternatively, provide 'chromtab' directly.
Backtrace:
▆
1. └─tepr::retrievechrom(genomename, verbose = FALSE, filterchrom = FALSE) at test-preprocessing-blacklisthighmap.R:10:1
── Error ('test-preprocessing-createtablescores.R:11:1'): (code run outside of `test_that()`) ──
Error in `retrievechrom(genomename, verbose = FALSE)`:
[tepr] Error: Genome not found.
'hg38' not found via SeqinfoForUCSCGenome.
Check spelling or UCSC availability.
Alternatively, provide 'chromtab' directly.
Backtrace:
▆
1. └─tepr::retrievechrom(genomename, verbose = FALSE) at test-preprocessing-createtablescores.R:11:1
── Error ('test-preprocessing.R:23:1'): (code run outside of `test_that()`) ────
Error in `retrievechrom(genomename, verbose)`:
[tepr] Error: Genome not found.
'hg38' not found via SeqinfoForUCSCGenome.
Check spelling or UCSC availability.
Alternatively, provide 'chromtab' directly.
Backtrace:
▆
1. └─tepr::preprocessing(...) at test-preprocessing.R:23:1
2. └─tepr:::.createbedgraphlistwmean(...)
3. └─tepr::blacklisthighmap(...)
4. └─tepr::retrievechrom(genomename, verbose)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 28 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64