Last updated on 2025-10-31 01:49:17 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 123.70 | 487.19 | 610.89 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 78.38 | 382.38 | 460.76 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 261.00 | 649.79 | 910.79 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 548.00 | 348.85 | 896.85 | OK | |
| r-devel-windows-x86_64 | 0.3.2 | 162.00 | 388.00 | 550.00 | ERROR | |
| r-patched-linux-x86_64 | 0.4.0 | 118.25 | 460.57 | 578.82 | OK | |
| r-release-linux-x86_64 | 0.4.0 | 116.88 | 457.73 | 574.61 | OK | |
| r-release-macos-arm64 | 0.4.0 | 43.00 | 189.00 | 232.00 | OK | |
| r-release-macos-x86_64 | 0.4.0 | 102.00 | 598.00 | 700.00 | OK | |
| r-release-windows-x86_64 | 0.4.0 | 179.00 | 400.00 | 579.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.0 | 44.00 | 196.00 | 240.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.4.0 | 102.00 | 613.00 | 715.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.4.0 | 142.00 | 419.00 | 561.00 | NOTE |
Version: 0.3.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [146s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/d/compiler/Ruby/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/Python/Scripts:/c/Program Files/Python:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/PuTTY:/c/Program Files (x86)/WinSCP:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files (x86)/Windows Kits/10/Windows Performance Toolkit:/c/Program Files/gs/gs/bin:/c/Program Files/jdk-11.0.18.10-hotspot/bin:/d/compiler/perl/c/bin:/d/compiler/perl/perl/site/bin:/d/compiler/perl/perl/bin:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R/bin/x64/)
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/d/compiler/Ruby/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/Python/Scripts:/c/Program Files/Python:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/PuTTY:/c/Program Files (x86)/WinSCP:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files (x86)/Windows Kits/10/Windows Performance Toolkit:/c/Program Files/gs/gs/bin:/c/Program Files/jdk-11.0.18.10-hotspot/bin:/d/compiler/perl/c/bin:/d/compiler/perl/perl/site/bin:/d/compiler/perl/perl/bin:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R/bin/x64/)
[ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.4.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'admixtools', 'LEA'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.4.0
Check: installed package size
Result: NOTE
installed size is 9.3Mb
sub-directories of 1Mb or more:
doc 1.5Mb
extdata 1.2Mb
libs 5.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.4.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘LEA’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.4.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'admixtools'
Flavor: r-oldrel-windows-x86_64