Last updated on 2025-12-19 03:50:30 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| animint2 | 2 | 11 | |
| atime | 1 | 12 | |
| aum | 13 | ||
| binsegRcpp | 13 | ||
| directlabels | 13 | ||
| FLOPART | 13 | ||
| inlinedocs | 13 | ||
| LOPART | 2 | 11 | |
| mlr3resampling | 4 | 9 | |
| nc | 13 | ||
| neuroblastoma | 3 | 10 | |
| PeakError | 2 | 11 | |
| PeakSegDisk | 13 | ||
| PeakSegDP | 2 | 11 | |
| PeakSegJoint | 13 | ||
| PeakSegOptimal | 13 | ||
| penaltyLearning | 13 | ||
| plotHMM | 13 | ||
| slurm | 13 | ||
| WeightedROC | 13 |
Current CRAN status: NOTE: 2, OK: 11
Version: 2025.10.17
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
data 3.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 2025.9.30
Check: examples
Result: ERROR
Running examples in ‘atime-Ex.R’ failed
The error most likely occurred in:
> ### Name: references_best
> ### Title: Best references
> ### Aliases: references_best
>
> ### ** Examples
>
>
> ## Polynomial and exponential time string functions.
> atime_result_string <- atime::atime(
+ seconds.limit=0.001,
+ N=unique(as.integer(10^seq(0,4,l=100))),
+ setup={
+ subject <- paste(rep("a", N), collapse="")
+ pattern <- paste(rep(c("a?", "a"), each=N), collapse="")
+ linear_size_replacement <- paste(rep("REPLACEMENT", N), collapse="")
+ },
+ PCRE.match=regexpr(pattern, subject, perl=TRUE),
+ TRE.match=regexpr(pattern, subject, perl=FALSE),
+ constant.replacement=gsub("a","constant size replacement",subject),
+ linear.replacement=gsub("a",linear_size_replacement,subject))
> (refs_best_string <- atime::references_best(atime_result_string))
Error in `[.data.table`(all.refs, , `:=`(rank, rank(-N)), by = c(L$by.vec, :
attempt access index 6/6 in VECTOR_ELT
Calls: <Anonymous> -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2025.9.30
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> data.table::setDTthreads(1) # for CRAN.
> if(require(testthat))test_check("atime")
Loading required package: testthat
Loading required package: atime
Saving _problems/test-CRAN-75.R
Saving _problems/test-CRAN-242.R
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 17 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CRAN.R:75:3'): more units defined in 1 row result ──────────────
Error in ``[.data.table`(all.refs, , `:=`(rank, rank(-N)), by = c(L$by.vec, "fun.name"))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─atime::references_best(atime.list) at test-CRAN.R:75:3
2. ├─all.refs[, `:=`(rank, rank(-N)), by = c(L$by.vec, "fun.name")]
3. └─data.table:::`[.data.table`(...)
── Error ('test-CRAN.R:242:1'): (code run outside of `test_that()`) ────────────
Error in ``[.data.table`(all.refs, , `:=`(rank, rank(-N)), by = c(L$by.vec, "fun.name"))`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─atime::references_best(my.atime) at test-CRAN.R:242:1
2. ├─all.refs[, `:=`(rank, rank(-N)), by = c(L$by.vec, "fun.name")]
3. └─data.table:::`[.data.table`(...)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 17 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2025.9.30
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Custom_Plots.Rmd’ using vignette
Quitting from Custom_Plots.Rmd#14-73 [chunk-1]
Error: processing vignette 'Custom_Plots.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building ‘Custom_Plots.Rmd’
--- re-building ‘Custom_References.Rmd’ using vignette
Quitting from Custom_References.Rmd#70-73 [chunk-2]
Error: processing vignette 'Custom_References.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building ‘Custom_References.Rmd’
--- re-building ‘Custom_Units.Rmd’ using vignette
Quitting from Custom_Units.Rmd#53-56 [chunk-3]
Error: processing vignette 'Custom_Units.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building ‘Custom_Units.Rmd’
--- re-building ‘cum_median.Rmd’ using vignette
Quitting from cum_median.Rmd#39-45 [chunk-2]
Error: processing vignette 'cum_median.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building ‘cum_median.Rmd’
--- re-building ‘regex.Rmd’ using vignette
Quitting from regex.Rmd#31-41 [chunk-3]
Error: processing vignette 'regex.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building ‘regex.Rmd’
--- re-building ‘sparse.Rmd’ using vignette
Quitting from sparse.Rmd#133-136 [chunk-5]
Error: processing vignette 'sparse.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building ‘sparse.Rmd’
SUMMARY: processing the following files failed:
‘Custom_Plots.Rmd’ ‘Custom_References.Rmd’ ‘Custom_Units.Rmd’
‘cum_median.Rmd’ ‘regex.Rmd’ ‘sparse.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2024.6.19
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Toby", "Dylan"),
family = "Hocking",
role = c("aut", "cre"),
email = "toby.hocking@r-project.org")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 4, OK: 9
Version: 2025.11.19
Check: package dependencies
Result: ERROR
Package required but not available: ‘pbdMPI’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2023.9.3
Check: installed package size
Result: NOTE
installed size is 7.9Mb
sub-directories of 1Mb or more:
data 7.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 2023.9.4
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Toby", "Dylan"),
family = "Hocking",
role = c("aut", "cre"),
email = "toby.hocking@r-project.org")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2024.1.24
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Toby", "Dylan"),
family = "Hocking",
role = c("aut", "cre"),
email = "toby.hocking@r-project.org"),
person(given = "Guillem",
family = "Rigaill",
role = "aut"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 2020.1.31
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Toby", "Dylan"),
family = "Hocking",
role = c("aut", "cre"),
email = "toby.hocking@r-project.org")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2020.1.31
Check: Rd files
Result: NOTE
checkRd: (-1) WeightedROC.Rd:10: Lost braces; missing escapes or markup?
10 | integer/numeric with values all in {0=negative,1=positive} or
| ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
| ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64