Last updated on 2025-03-03 01:51:01 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 6.62 | 218.50 | 225.12 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 4.13 | 146.42 | 150.55 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 383.89 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 368.93 | OK | |||
| r-devel-macos-arm64 | 1.0.1 | 86.00 | OK | |||
| r-devel-macos-x86_64 | 1.0.1 | 222.00 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 7.00 | 175.00 | 182.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.1 | 6.25 | 195.24 | 201.49 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 6.14 | 191.97 | 198.11 | OK | |
| r-release-macos-arm64 | 1.0.1 | 83.00 | OK | |||
| r-release-macos-x86_64 | 1.0.1 | 233.00 | OK | |||
| r-release-windows-x86_64 | 1.0.1 | 9.00 | 160.00 | 169.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 67.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 234.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.1 | 9.00 | 160.00 | 169.00 | OK |
Version: 1.0.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘barPlot.Rd’ ‘boxPlot.Rd’ ‘customiseText.R’ ‘customiseText.Rd’
‘datatableInternal.R’ ‘formatEstimateName.R’ ‘formatEstimateName.Rd’
‘formatEstimateValue.R’ ‘formatEstimateValue.Rd’ ‘formatHeader.R’
‘formatHeader.Rd’ ‘formatTable.R’ ‘formatTable.Rd’ ‘fxTable.R’
‘gtTable.R’ ‘helperFunctions.R’ ‘mockResults.R’ ‘plot.R’
‘scatterPlot.Rd’ ‘themeVisOmop.Rd’ ‘tidy.R’ ‘utilities.R’
‘visOmopTable.R’ ‘visOmopTable.Rd’ ‘visTable.R’ ‘visTable.Rd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘visOmopResults-Ex.R’ failed
The error most likely occurred in:
> ### Name: emptyTable
> ### Title: Returns an empty table
> ### Aliases: emptyTable
>
> ### ** Examples
>
> emptyTable(type = "flextable")
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘systemfonts’
Calls: emptyTable ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(visOmopResults)
>
> test_check("visOmopResults")
Starting 2 test processes
[ FAIL 10 | WARN 22 | SKIP 0 | PASS 282 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-formatTable.R:25:3'): test it works ────────────────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─visOmopResults::formatTable(result, type = "flextable") at test-formatTable.R:25:3
2. │ └─visOmopResults:::validateStyle(style, type)
3. │ ├─base::eval(...)
4. │ │ └─base::eval(...)
5. │ └─visOmopResults:::flextableStyleInternal(styleName = style)
6. └─base::loadNamespace(x)
7. ├─base::namespaceImportFrom(...)
8. │ └─base::asNamespace(ns)
9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
10. ├─base::namespaceImportFrom(...)
11. │ └─base::asNamespace(ns)
12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
14. └─base (local) withOneRestart(expr, restarts[[1L]])
15. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-fxTable.R:9:3'): fxTableInternal ───────────────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `fxTableInternal(table_to_format, style = list(header = list(cell = officer::fp_cell(background.color = "#c8c8c8"),
text = officer::fp_text(bold = TRUE)), header_name = list(cell = officer::fp_cell(background.color = "#d9d9d9"),
text = officer::fp_text(bold = TRUE)), header_level = list(cell = officer::fp_cell(background.color = "#e1e1e1"),
text = officer::fp_text(bold = TRUE)), column_name = list(text = officer::fp_text(bold = TRUE)),
title = list(text = officer::fp_text(bold = TRUE, color = "blue"))),
na = NULL, title = "Test 1", subtitle = NULL, caption = NULL,
groupColumn = NULL, groupAsColumn = FALSE, groupOrder = NULL)`: The package "flextable" is required.
Backtrace:
▆
1. └─visOmopResults:::fxTableInternal(...) at test-fxTable.R:9:3
2. └─rlang::check_installed("flextable")
── Error ('test-fxTable.R:158:3'): fxTableInternal, test default styles and NULL ──
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `fxTableInternal(table_to_format, style = NULL, na = NULL, title = "Test 1",
subtitle = NULL, caption = NULL, groupColumn = NULL, groupAsColumn = FALSE,
groupOrder = NULL)`: The package "flextable" is required.
Backtrace:
▆
1. └─visOmopResults:::fxTableInternal(...) at test-fxTable.R:158:3
2. └─rlang::check_installed("flextable")
── Error ('test-fxTable.R:231:3'): fxTableInternal, test merge ─────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─rlang::eval_bare(tableStyle(type = "flextable")) at test-fxTable.R:231:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImportFrom(...)
4. │ └─base::asNamespace(ns)
5. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
6. ├─base::namespaceImportFrom(...)
7. │ └─base::asNamespace(ns)
8. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
9. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
10. └─base (local) withOneRestart(expr, restarts[[1L]])
11. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-fxTable.R:284:3'): multiple groupColumn ────────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `fxTableInternal(table_to_format, delim = ":", style = list(subtitle = list(text = officer::fp_text(bold = TRUE,
font.size = 12, color = "blue")), body = list(text = officer::fp_text(color = "red"),
cell = officer::fp_cell(border = officer::fp_border())),
group_label = list(cell = officer::fp_cell(background.color = "#e1e1e1"),
text = officer::fp_text(color = "blue")), header_name = list(cell = officer::fp_cell(background.color = "black"),
text = officer::fp_text(color = "white"))), na = "-",
title = "Title test 2", subtitle = "Subtitle for test 2",
caption = "*This* is the caption", groupColumn = list(group_name_group_level = c("group_name",
"group_level")), groupAsColumn = TRUE)`: The package "flextable" is required.
Backtrace:
▆
1. └─visOmopResults:::fxTableInternal(...) at test-fxTable.R:284:3
2. └─rlang::check_installed("flextable")
── Error ('test-visTable.R:12:3'): visTable with SR ────────────────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─visOmopResults::visTable(...) at test-visTable.R:12:3
2. │ └─visOmopResults::formatTable(...)
3. │ └─visOmopResults:::validateStyle(style, type)
4. │ ├─base::eval(...)
5. │ │ └─base::eval(...)
6. │ └─visOmopResults:::flextableStyleInternal(styleName = style)
7. └─base::loadNamespace(x)
8. ├─base::namespaceImportFrom(...)
9. │ └─base::asNamespace(ns)
10. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
11. ├─base::namespaceImportFrom(...)
12. │ └─base::asNamespace(ns)
13. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
14. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
15. └─base (local) withOneRestart(expr, restarts[[1L]])
16. └─base (local) doWithOneRestart(return(expr), restart)
── Failure ('test-visOmopTable.R:42:3'): visOmopTable ──────────────────────────
Expected `... <- NULL` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'systemfonts'
── Error ('test-visOmopTable.R:52:3'): visOmopTable ────────────────────────────
Error in `eval(code, test_env)`: object 'fx1' not found
Backtrace:
▆
1. └─testthat::expect_true("flextable" == class(fx1)) at test-visOmopTable.R:52:3
2. └─testthat::quasi_label(enquo(object), label, arg = "object")
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-visOmopTable.R:191:3'): renameColumn works ─────────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-visOmopTable.R:191:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─visOmopResults::visOmopTable(...)
8. │ └─visOmopResults::visTable(...)
9. │ └─visOmopResults::formatTable(...)
10. │ └─visOmopResults:::validateStyle(style, type)
11. │ ├─base::eval(...)
12. │ │ └─base::eval(...)
13. │ └─visOmopResults:::flextableStyleInternal(styleName = style)
14. └─base::loadNamespace(x)
15. ├─base::namespaceImportFrom(...)
16. │ └─base::asNamespace(ns)
17. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
18. ├─base::namespaceImportFrom(...)
19. │ └─base::asNamespace(ns)
20. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
21. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
22. └─base (local) withOneRestart(expr, restarts[[1L]])
23. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-visOmopTable.R:335:3'): empty table ────────────────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─visOmopResults::visOmopTable(...) at test-visOmopTable.R:335:3
2. │ └─visOmopResults::visTable(...)
3. │ └─visOmopResults::emptyTable(type = type)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImportFrom(...)
6. │ └─base::asNamespace(ns)
7. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
8. ├─base::namespaceImportFrom(...)
9. │ └─base::asNamespace(ns)
10. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
12. └─base (local) withOneRestart(expr, restarts[[1L]])
13. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 10 | WARN 22 | SKIP 0 | PASS 282 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a01_tables.Rmd’ using rmarkdown
Quitting from lines 76-98 [unnamed-chunk-4] (a01_tables.Rmd)
Error: processing vignette 'a01_tables.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘a01_tables.Rmd’
--- re-building ‘a02_plots.Rmd’ using rmarkdown
--- finished re-building ‘a02_plots.Rmd’
SUMMARY: processing the following file failed:
‘a01_tables.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64