CRAN Package Check Results for Maintainer ‘Xavier Bledsoe <xavier.bledsoe at vanderbilt.edu>’

Last updated on 2026-02-22 02:51:09 CET.

Package	ERROR	OK
neuroimaGene	4	10

Package neuroimaGene

Current CRAN status: ERROR: 4, OK: 10

Additional issues

M1mac

Version: 0.1.2
Check: examples
Result: ERROR Running examples in ‘neuroimaGene-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: neuro_vis > ### Title: 2D visualization plot of a neuroimaGene object > ### Aliases: neuro_vis > ### Keywords: neuroimaging > > ### ** Examples > > gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4') > ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE) > neuro_vis(ng, atlas = 'DKT') Error: ! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct. ℹ Please use `ggplot() + geom_brain()` instead. Backtrace: ▆ 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT") 2. └─ggseg::ggseg(...) 3. └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.") 4. └─lifecycle:::deprecate_stop0(msg) 5. └─rlang::cnd_signal(...) Execution halted Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘neuroimaGene.Rmd’ using rmarkdown Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `eval(parse(text = fs))$data`: ! object of type 'closure' is not subsettable --- Backtrace: ▆ 1. └─neuroimaGene::neuro_vis(...) 2. ├─data.table::as.data.table(...) 3. ├─base::merge(...) 4. ├─data.table::merge.data.table(...) 5. │ └─data.table::is.data.table(y) 6. └─data.table::as.data.table(eval(parse(text = fs))$data) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics: object of type 'closure' is not subsettable --- failed re-building ‘neuroimaGene.Rmd’ SUMMARY: processing the following file failed: ‘neuroimaGene.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 0.1.2
Check: examples
Result: ERROR Running examples in ‘neuroimaGene-Ex.R’ failed The error most likely occurred in: > ### Name: neuro_vis > ### Title: 2D visualization plot of a neuroimaGene object > ### Aliases: neuro_vis > ### Keywords: neuroimaging > > ### ** Examples > > gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4') > ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE) > neuro_vis(ng, atlas = 'DKT') Error: ! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct. ℹ Please use `ggplot() + geom_brain()` instead. Backtrace: ▆ 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT") 2. └─ggseg::ggseg(...) 3. └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.") 4. └─lifecycle:::deprecate_stop0(msg) 5. └─rlang::cnd_signal(...) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘neuroimaGene.Rmd’ using rmarkdown Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `eval(parse(text = fs))$data`: ! object of type 'closure' is not subsettable --- Backtrace: ▆ 1. └─neuroimaGene::neuro_vis(...) 2. ├─data.table::as.data.table(...) 3. ├─base::merge(...) 4. ├─data.table::merge.data.table(...) 5. │ └─data.table::is.data.table(y) 6. └─data.table::as.data.table(eval(parse(text = fs))$data) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics: object of type 'closure' is not subsettable --- failed re-building ‘neuroimaGene.Rmd’ SUMMARY: processing the following file failed: ‘neuroimaGene.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc