Last updated on 2025-05-13 02:51:34 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CAESAR.Suite | 1 | 2 | 10 |
Current CRAN status: ERROR: 1, NOTE: 2, OK: 10
Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'STMOB.Rmd' using rmarkdown
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/MOB_ST.rda?raw=true'
Content type 'application/octet-stream' length 5988380 bytes (5.7 MB)
==================================================
downloaded 5.7 MB
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/MOB_scRNA.rda?raw=true'
Content type 'application/octet-stream' length 48066404 bytes (45.8 MB)
==================================================
downloaded 45.8 MB
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building 'STMOB.Rmd'
--- re-building 'XeniumBC.Rmd' using rmarkdown
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_scRNAList.rda?raw=true'
Content type 'application/octet-stream' length 2310272 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_XeniumList.rda?raw=true'
Content type 'application/octet-stream' length 1256437 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_feature_imgList.rda?raw=true'
Quitting from XeniumBC.Rmd:41-62 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_feature_imgList.rda?raw=true'
---
Backtrace:
▆
1. └─utils::download.file(githubURL, BC_feature_imgList_file, mode = "wb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'XeniumBC.Rmd' failed with diagnostics:
cannot open URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_feature_imgList.rda?raw=true'
--- failed re-building 'XeniumBC.Rmd'
SUMMARY: processing the following file failed:
'XeniumBC.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.2
Check: installed package size
Result: NOTE
installed size is 8.4Mb
sub-directories of 1Mb or more:
data 1.4Mb
doc 1.2Mb
libs 5.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64