Deciding what resolution to use can be a difficult question when approaching a clustering analysis. One way to approach this problem is to look at how samples move as the number of clusters increases. This package allows you to produce clustering trees, a visualisation for interrogating clusterings as resolution increases.
Version: | 0.5.1 |
Depends: | R (≥ 3.5), ggraph |
Imports: | checkmate, igraph, dplyr, grid, ggplot2 (≥ 3.4.0), viridis, methods, rlang, tidygraph, ggrepel |
Suggests: | testthat (≥ 2.1.0), knitr, rmarkdown, SingleCellExperiment, Seurat (≥ 2.3.0), covr, SummarizedExperiment, pkgdown, spelling |
Published: | 2023-11-05 |
DOI: | 10.32614/CRAN.package.clustree |
Author: | Luke Zappia |
Maintainer: | Luke Zappia <luke at lazappi.id.au> |
BugReports: | https://github.com/lazappi/clustree/issues |
License: | GPL-3 |
URL: | https://github.com/lazappi/clustree, https://lazappi.github.io/clustree/ |
NeedsCompilation: | no |
Language: | en-GB |
Citation: | clustree citation info |
Materials: | README NEWS |
CRAN checks: | clustree results |
Reference manual: | clustree.pdf |
Vignettes: |
Plotting clustering trees |
Package source: | clustree_0.5.1.tar.gz |
Windows binaries: | r-devel: clustree_0.5.1.zip, r-release: clustree_0.5.1.zip, r-oldrel: clustree_0.5.1.zip |
macOS binaries: | r-devel (arm64): clustree_0.5.1.tgz, r-release (arm64): clustree_0.5.1.tgz, r-oldrel (arm64): clustree_0.5.1.tgz, r-devel (x86_64): clustree_0.5.1.tgz, r-release (x86_64): clustree_0.5.1.tgz, r-oldrel (x86_64): clustree_0.5.1.tgz |
Old sources: | clustree archive |
Reverse imports: | crosshap, scRNAstat, scTreeViz |
Reverse suggests: | CIARA, MitoHEAR, plotthis |
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