craftgrn 0.1.6

• Revised DESCRIPTION references to avoid CRAN incoming spell-check notes and replaced the arXiv URL reference with the requested arXiv DOI format.

craftgrn 0.1.5

• Addressed CRAN resubmission feedback by adding method references to DESCRIPTION, completing value documentation, replacing \dontrun{} examples, avoiding default writes to the working directory, and removing a fixed seed from package function code.

craftgrn 0.1.4

• Added production-oriented Module 3 APIs for regulatory topic modeling: run_topic_modeling(), module3_construct_docs(), module3_train_topic_models(), module3_extract_topics(), and build_module3_qc_report().
• Added reusable Module 3 topic-input caches and compact pass-only topic-link output as the default production behavior.
• Added visualize_topic_modeling_results() and visualize_differential_grns() for standard Module 3 result browsers.

craftgrn 0.1.3

• Fixed Windows incoming pretest failures by normalizing path comparisons in report tests and hardening temporary topic-model fixture directory creation.
• Revised CRAN-facing package metadata wording to reduce incoming spell-check notes for abbreviated scientific terms.

craftgrn 0.1.2

• Initial CRAN submission candidate.
• Added Module 1 TFBS prediction, Module 2 TF-target prediction, and Module 3 regulatory topic modeling workflows.
• Added package-native QC reports and pkgdown documentation.