The futurize package allows you to easily turn sequential code
into parallel code by piping the sequential code to the futurize()
function. Easy!
library(futurize)
plan(multisession)
library(foreach)
slow_fcn <- function(x) {
message("x = ", x)
Sys.sleep(0.1) # emulate work
x^2
}
xs <- 1:10
ys <- foreach(x = xs) %do% slow_fcn(x) |> futurize()
This vignette demonstrates how to use this approach to parallelize
functions such as foreach() and times() of the
foreach package. For example, consider:
library(foreach)
xs <- 1:1000
ys <- foreach(x = xs) %do% slow_fcn(x)
This foreach() construct is resolved sequentially. We can use the
futurize package to tell foreach to hand over the
orchestration of parallel tasks to futureverse. All we need to do is
to pass the expression to futurize() as in:
library(foreach)
library(futurize)
plan(multisession) ## parallelize on local machine
xs <- 1:1000
ys <- foreach(x = xs) %do% slow_fcn(x) |> futurize()
#> x = 1
#> x = 2
#> x = 3
#> ...
#> x = 10
Note how messages produced on parallel workers are relayed as-is back
to the main R session as they complete. Not only messages, but also
warnings and other types of conditions are relayed back as-is.
Likewise, standard output produced by cat(), print(), str(), and
so on is relayed in the same way. This is a unique feature of
Futureverse - other parallel frameworks in R, such as parallel,
foreach with doParallel, and BiocParallel, silently drop
standard output, messages, and warnings produced on workers. With
futurize, your code behaves the same whether it runs sequentially
or in parallel: nothing is lost in translation.
The built-in multisession backend parallelizes on your local
computer and it works on all operating systems. There are other
parallel backends to choose from, including alternatives to
parallelize locally as well as distributed across remote machines,
e.g.
plan(future.mirai::mirai_multisession)
and
plan(future.batchtools::batchtools_slurm)
Here is another example that parallelizes times() of the
foreach package via the futureverse ecosystem:
library(foreach)
library(futurize)
ys <- times(10) %do% rnorm(3) |> futurize()
The futurize() function supports parallelization of the following
foreach functions:
foreach(...) %do% { ... }times(...) %do% { ... } with seed = TRUE as the defaultFor progress reporting, please see the [progressr] package. It is
specially designed to work with the Futureverse ecosystem and provide
progress updates from parallelized computations in a near-live
fashion. See the vignette("futurize-11-apply", package = "futurize")
for more details and an example.