NEWS | R Documentation |
News for Package 'protViz'
Changes in protViz version 0.7.3 (2022-04-04)
added functions
blockRandom
,assignPlatePosition
,insertSamples
for configuring MS instrument queues.replaced pubmedid urls by DOIs.
add replication code for Figures 1-5 in doi:10.1021/jasms.0c00040.
Changes in protViz version 0.6.8 (2020-04-23)
fix #8.
added method for centroiding a spectrum acquired in profile mode.
fix #11.
new by labeling using legend with fragment ion ordered by m/z values #10.
fix #9.
Changes in protViz version 0.5.0 (2019-11-18)
added comet.R helper functions.
recfactored peakplot functions.
Changes in protViz version 0.4.0 (2019-01-03)
resolve #6.
new S3 method for fragmentIon
as.data.frame
.
Changes in protViz version 0.3.0 (2017-06-22)
refactored
?findNN
and?AA
man pages.-
ssrc
accepts also avector
as argument. -
as.data.frame.pepxml
.
Changes in protViz version 0.2.45 (2017-11-17)
implement Rcpp module
Fasta
#3.added the Swiss-Prot P12763 protein for testing.
added
C++
STLlower_bound
method.added orcid in DESCRIPTION file
Changes in protViz version 0.2.37 (2017-10-11)
-
initial as.data.frame
function. added unit test for
ssrc
function.deleted superfluous sigmamix data; please use https://bioconductor.org/packages/msqc1/ described in doi:10.1002/pmic.201500502.
Changes in protViz version 0.2.31 (2017-05-26)
fixed “register native routine issue” by using
tools::package_native_routine_registration_skeleton(".")
and renaming .C exports to__findNN_
and__findNN
#1.added support for Matrixce Sciense Mascot xml export; new S3classes:
mascot
andmascot_query
.cosmetics on
protViz.Rnw
vignette file.added
ssrc
method for “Sequence Specific Retention Calculator”.
Changes in protViz version 0.2.16 (2016-06-01)
PTM Marker Finder:
added PeptideSequence and modification to csv output.
Changes in protViz version 0.2.13 (2016-04-29)
General:
added NEWS.Rd, CITATION.
changed URL.
fix
R CMD check
issues with R version 3.3.
Changes in protViz version 0.1.97
BUG FIXES:
free memory
computeFragmentIons.c
Testing:
added more tests for
deisotoper.R
andfragmentIon.R
.