spatialGE 1.2.2
spatialGE 1.2.1
- Added C++ code to speed up
STenrich computations (Thank
you, Dr. Soupir!).
- The
STenrich function can now calculate gene set
enrichment scores (via GSVA) in addition to gene set
average expression.
- The
STenrich function can now test for gene set
“hot-spots” within an specific tissue domain (annot and
domain arguments).
- Spatial distances can now be log-transformed for
STgradient (log argument).
- Example data sets are now in the spatialGE_Data GitHub
repository.
- New functions
spatial_metadata and
tissue_names to quickly access the names of spot/cell
annotations and sample names.
- Re-assessed package dependencies.
- Use of
DelayedArray for some calculations.
- Several bug fixes.
spatialGE 1.2.0
- Functions
STenrich, STgradient, and
STdiff available.
- Added C++ code for Seurat’s implementation of
FindVariableFeatures
spatialGE 1.1.0
- Multiple, significant changes to STlist (incompatible with STlist
objects from version 1.0).