HelpersMG-package |
Tools for Environmental Analyses, Ecotoxicology and Various R Functions |
as.mcmc.mcmcComposite |
Extract mcmc object from a mcmcComposite object |
as.parameters |
Extract parameters from mcmcComposite object |
as.quantiles |
Extract quantile distribution from mcmcComposite object |
asc |
Return the codes (in UTF-8) of a string |
barplot_errbar |
Plot a barplot graph with error bar on y |
cArrows |
Draw curved lines with arrowhead |
ChangeCoordinate |
Return a value in a changed coordinate |
chr |
Return the characters defined by the codes |
clean.knitr |
Delete temporary files created during knitr compile |
compare |
Run a shiny application for basic functions of comparison |
compare_AIC |
Compares the AIC of several outputs |
compare_AICc |
Compares the AICc of several outputs |
compare_BIC |
Compares the BIC of several outputs |
contingencyTable.compare |
Contingency table comparison using Akaike weight |
convert.tz |
Convert one Date-Time from one timezone to another |
d |
Write an ASCII Representation of a vector object |
dbeta_new |
Density for the Beta distributions. |
DIx |
Return an index of quantitative asymmetry and complexity named Developmental Instability Index (DIx) |
dSnbinom |
Density for the sum of random variable with negative binomial distributions. |
duplicated_packages |
List the duplicated packages with their locations |
ellipse |
Plot an ellipse |
ExtractAIC.glm |
Return AIC, AICc or BIC from a glm object |
flexit |
Return the flexit |
FormatCompareAIC |
Format data to be used with compare_AIC() |
format_ncdf |
Return an array with ncdf data |
IC_clean_data |
Clean the dataframe before to be used with IC_threshold_matrix |
IC_correlation_simplify |
Simplify the correlation matrix |
IC_threshold_matrix |
Calculate correlation matrix |
index.periodic |
Estimate indices in periodic timeseries based on anchored minimum and maximum |
ind_long_lat |
Return or the index in ncdf object from lat/longitude or inverse |
inside.search |
Search a string within files of a folder |
invlogit |
Return the inverse logit |
LD50 |
Estimate the parameters that best describe LD50 |
LD50_MHmcmc |
Metropolis-Hastings algorithm for LD50 |
LD50_MHmcmc_p |
Generates set of parameters to be used with LD50_MHmcmc() |
list.packages |
List the installed packages with their locations |
local.search |
Return path of file searched for in local disk based on its file name |
logit |
Return the logit |
logLik.compareAIC |
Return Log Likelihood generated by FormatCompareAIC |
logLik.LD50 |
Return Log Likelihood of a fit generated by LD50 |
merge.mcmcComposite |
Merge two mcmcComposite results |
MHalgoGen |
Monte-Carlo Markov-chain with Metropolis-Hastings algorithm |
minmax.periodic |
Search for minimum and maximum indices in periodic timeseries |
modeled.hist |
Return the theoretical value for the histogram bar |
modifyVector |
Modifies Elements of a Vector |
moon.info |
Moon phase based on a date |
MovingWindow |
Return a moving average of a vector. |
NagelkerkeScaledR2 |
Return the scaled R2 defined by Nagelkerke (1991) |
newcompassRose |
Display a compass rose |
newmap.scale |
Add Scale to Existing Unprojected Map |
openwd |
Open a finder window with current working directory in MacOS X |
plot.IconoCorel |
Clean the dataframe before to be used with IC_threshold_matrix |
plot.LD50 |
Plot results of LD50() that best describe LD50 |
plot.mcmcComposite |
Plot the result of a mcmcComposite object |
plot_add |
Add a plot to a previous one |
plot_errbar |
Plot a xy graph with error bar on x and/or y |
predict.LD50 |
Estimate survival according to doses |
pSnbinom |
Distribution function for the sum of random variable with negative binomial distributions. |
qSnbinom |
Quantile function for the sum of random variable with negative binomial distributions. |
qvlmer |
Quasi Variances for lmer Model Coefficients |
r2norm |
Random generation for Gaussian distributions different at left and right |
RandomFromHessianOrMCMC |
Random numbers based on Hessian matrix or MCMC |
read_folder |
Read files present in a folder and creates a list with the content of these files |
RectangleRegression |
Return parameters of rectangle regression |
RM_add |
Create a results managment or add a value in a results managment to an object |
RM_delete |
Delete a results managment or a result within a results managment from an object |
RM_duplicate |
Duplicate a results managment within an object. |
RM_get |
Get a value in a results managment to an object |
RM_list |
Return the list of results managment of an object. |
rnbinom_new |
Random numbers for the negative binomial distribution. |
rSnbinom |
Random generation for the sum of random variable with negative binomial distributions. |
ScalePreviousPlot |
Return the scale of the previous plot |
SEfromHessian |
Standard error of parameters based on Hessian matrix |
series.compare |
Data series comparison using Akaike weight |
show_name |
Show the name of a point |
similar |
Test if two vectors contains the same elements independently of their order |
specify_decimal |
Return a number as character with specified number of decimals |
summary.mcmcComposite |
Summarize the result of a mcmcComposite object |
sun.info |
Estimate the time of sunrise and sunset according to longitude, latitude and date |
symbol.Female |
Plot a female symbol in the plotting region |
symbol.Male |
Plot a male symbol in the plotting region |
symmetricize |
Make a matrix symmetric |
tide.info |
Annual tide calendar for one particular location |
tnirp |
Read an ASCII text representation of a named or not vector object |
universalmclapply |
Run the function FUN on X using parallel computing |
wget |
Download a file from internet and save it locally |