Clinical Graphs and Tables Adhering to Graphical Principles


[Up] [Top]

Documentation for package ‘visR’ version 0.2.0

Help Pages

add_annotation Add annotations to a visR object
add_CI Add confidence interval (CI) to visR object
add_CI.ggsurvfit Add confidence interval (CI) to visR object
add_CNSR Add censoring symbols to a visR object
add_CNSR.ggsurvfit Add censoring symbols to a visR object
add_risktable Add risk tables to visR plots through an S3 method
add_risktable.ggsurvfit Add risk tables to visR plots through an S3 method
adtte adtte
AlignPlots Align multiple ggplot graphs, taking into account the legend
apply_attrition Apply list of inclusion/exclusion criteria to a patient-level dataframe
apply_theme Applies a theme to a ggplot object.
brca_cohort Cancer survival data
define_theme Provides a simple wrapper for themes
estimate_KM Wrapper for Kaplan Meier Time-to-Event analysis
get_attrition Generate cohort attrition table
get_COX_HR Summarize Hazard Ratio from a survival object using S3 method
get_COX_HR.survfit Summarize Hazard Ratio from a survival object using S3 method
get_pvalue Summarize the test for equality across strata from a survival object using S3 method
get_quantile Wrapper around quantile methods
get_quantile.survfit Wrapper around quantile methods
get_risktable Obtain risk tables for tables and plots
get_risktable.survfit Obtain risk tables for tables and plots
get_summary Summarize the descriptive statistics across strata from a survival object using S3 method
get_summary.survfit Summarize the descriptive statistics across strata from a survival object using S3 method
get_tableone Calculate summary statistics
get_tableone.default Calculate summary statistics
legendopts Translates options for legend into a list that can be passed to ggplot2
render Render a dataframe or tibble
render.data.frame Render a dataframe or tibble
render.risktable Render a dataframe or tibble
render.tableone Render a dataframe or tibble
summarize_long Calculate summary statistics for a vector
summarize_long.default Create variable summary for all other variable types
summarize_long.factor Create variable summary for factors
summarize_long.integer Create variable summary for numeric variables
summarize_long.numeric Create variable summary for numeric variables
summarize_short Create abbreviated variable summary for table1
summarize_short.default Create variable summary for all other variable types
summarize_short.factor Create variable summary for factors
summarize_short.integer Create variable summary for integer variables
summarize_short.numeric Create variable summary for numeric variables
tableone Display a summary Table (i.e. table one)
the_lhs Find the "lhs" in the pipeline
tidyme Extended tidy cleaning of selected objects using S3 method
tidyme.default Extended tidy cleaning of selected objects using S3 method
tidyme.survfit Extended tidy cleaning of selected objects using S3 method
visr Plot a visR object
visR Global 'visR' package
visr.attrition Plot a visR object
visr.default Plot a visR object
visr.survfit Plot a visR object