# Fast Estimation of Gaussian Mixture Copula Models

## Documentation for package ‘GMCM’ version 1.4.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

GMCM-package | Fast optimization of Gaussian Mixture Copula Models
as.theta | Coerce a list to a theta object
choose.theta | Heuristically chosen starting value of theta
classify | Classify observations
colSds | Row and column standard deviations
colsds | Row and column standard deviations
dmvnormal | Multivariate Gaussian density and simulation
EMAlgorithm | EM algorithm for Gaussian mixture models
fit.full.GMCM | Estimate GMCM parameters of the general model
fit.full.gmcm | Estimate GMCM parameters of the general model
fit.general.GMCM | Estimate GMCM parameters of the general model
fit.general.gmcm | Estimate GMCM parameters of the general model
fit.meta.GMCM | Estimate GMCM parameters of the special model
fit.meta.gmcm | Estimate GMCM parameters of the special model
fit.special.GMCM | Estimate GMCM parameters of the special model
fit.special.gmcm | Estimate GMCM parameters of the special model
freshVsFrozen | Reproducibility between Fresh and Frozen B-cell subtypes
full2meta | Convert between parameter formats
get.IDR | Posterior class probabilities, local, and adjusted IDRs.
get.idr | Posterior class probabilities, local, and adjusted IDRs.
get.prob | Posterior class probabilities, local, and adjusted IDRs.
GMCM | Fast optimization of Gaussian Mixture Copula Models
goodness.of.fit | Goodness of fit for the general GMCM
is.theta | Check if parameters are valid
meta2full | Convert between parameter formats
plot.theta | Plotting method for "theta" objects
print.theta | Print method for theta class
rmvnormal | Multivariate Gaussian density and simulation
rowSds | Row and column standard deviations
rowsds | Row and column standard deviations
rtheta | Get random parameters for the Gaussian mixture (copula) model
runGMCM | Run the GMCM shiny application
SimulateGMCMData | Simulation from Gaussian mixture (copula) models
SimulateGMMData | Simulation from Gaussian mixture (copula) models
summary.theta | Summary method for theta class
u133VsExon | Reproducibility between U133 plus 2 and Exon microarrays
Uhat | Fast ranking function