# Historical and Ahistorical Population Projection Matrix Analysis

## Documentation for package ‘lefko3’ version 6.7.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

lefko3-package | Historical and Ahistorical Population Projection Matrix Analysis
actualstage3 | Calculate Actual Stage, Age, Stage-Pair, or Age-Stage Distributions
add_lM | Add Matrices to a lefkoMat or lefkoMatList Object
add_stage | Add a New Stage to an Existing lefkoMat or lefkoMatList Object
aflefko2 | Create Function-based Ahistorical Age x Stage Matrix Projection Model
anthyllis | Matrix Set of _Anthyllis vulneraria_ Populations in Belgium
append_lP | Append Projections To Create New lefkoProj Object
arlefko2 | Create Raw Ahistorical Age x Stage Matrix Projection Model
beverton3 | Two-Parameter Beverton-Holt Function
bootstrap3 | Bootstrap Standardized hfv_data Datasets
cond_diff | Extract Conditional Ahistorical Difference Matrices
cond_hmpm | Extract Conditional Ahistorical Matrices from Historical MPM
create_lM | Create lefkoMat Object from Given Input Matrices or an MPM Database
create_pm | Creates a Skeleton Paramnames Object for Use in Function-based Modeling
cycle_check | Check Continuity of Life Cycle through Matrices in lefkoMat Objects
cypdata | Demographic Dataset of _Cypripedium candidum_ Population, in Horizontal Format
cypvert | Demographic Dataset of _Cypripedium candidum_ Population, in Vertical Format
delete_lM | Delete Matrices from lefkoMat or lefkoMatList Object
density_input | Set Density Dependence Relationships in Matrix Elements
density_vr | Set Density Dependence Relationships in Vital Rates
diff_lM | Calculate Difference Matrices Between lefkoMat Objects of Equal Dimensions
edit_lM | Edit lefkoMat or lefkoMatList Object based on Supplemental Data
elasticity3 | Estimate Elasticity of Population Growth Rate to Matrix Elements
elasticity3.dgCMatrix | Estimate Elasticity of Population Growth Rate of a Single Sparse Matrix
elasticity3.lefkoMat | Estimate Elasticity of Population Growth Rate of a lefkoMat Object
elasticity3.lefkoMatList | Estimate Elasticity of Population Growth Rate of a lefkoMatList Object
elasticity3.list | Estimate Elasticity of Population Growth Rate of a List of Matrices
elasticity3.matrix | Estimate Elasticity of Population Growth Rate of a Single Matrix
flefko2 | Create Function-based Ahistorical Matrix Projection Model
flefko3 | Create Function-based Historical Matrix Projection Model
fleslie | Create Function-based Age-based (Leslie) Matrix Projection Model
f_projection3 | Project Function-based Matrix Projection Model
hfv_qc | Assess Quality of hfv Datasets
historicalize3 | Create Historical Vertical Data Frame from Ahistorical Vertical Data Frame
hist_null | Create Historical MPMs Assuming No Influence of Individual History
image3 | Create Matrix Image
image3.dgCMatrix | Create a Matrix Image for a Single Sparse Matrix
image3.lefkoElas | Create Matrix Image(s) for lefkoElas Object
image3.lefkoMat | Create Matrix Image(s) for lefkoMat Object
image3.lefkoSens | Create Matrix Image(s) for lefkoSens Object
image3.list | Create Matrix Images for Matrices in a List
image3.matrix | Create a Matrix Image for a Single Matrix
lambda3 | Estimate Actual or Deterministic Population Growth Rate
lathyrus | Demographic Dataset of _Lathyrus vernus_ Population
lefko3 | Historical and Ahistorical Population Projection Matrix Analysis
lmean | Estimate Mean Projection Matrices
logistic3 | Two-Parameter logistic Function
ltre3 | Conduct a Life Table Response Experiment
markov_run | Creates Vector of Times Based on First-Order Markov Transition Matrix
matrix_interp | Arranges Matrix Elements in Order of Magnitude for Interpretation
miniMod | Minimize lefkoMod Object by Conversion to vrm_input Object
modelsearch | Develop Best-fit Vital Rate Estimation Models for MPM Development
mpm_create | General Matrix Projection Model and Bootstrapped MPM Creation
overwrite | Create Overwrite Table for MPM Development
plot.lefkoProj | Plot Projection Simulations
projection3 | Conduct Population Projection Simulations
pyrola | Demographic Dataset of _Pyrola japonica_ and _Pyrola subaphylla_ Populations, in Horizontal Format
repvalue3 | Estimate Reproductive Value
repvalue3.dgCMatrix | Estimate Reproductive Value Vector for a Single Population Projection Matrix
repvalue3.lefkoMat | Estimate Reproductive Value Vectors of Matrices in a lefkoMat Object
repvalue3.lefkoMatList | Estimate Reproductive Value Vectors of Matrices in a lefkoMatList Object
repvalue3.list | Estimate Reproductive Value Vector for a List of Projection Matrices
repvalue3.matrix | Estimate Reproductive Value Vector for a Single Population Projection Matrix
ricker3 | Two-Parameter Ricker Function
rlefko2 | Create Raw Ahistorical Matrix Projection Model
rlefko3 | Create Raw Historical Matrix Projection Model
rleslie | Create Raw Leslie (Age-based) Matrix Projection Model
sensitivity3 | Estimate Sensitivity of Population Growth Rate to Matrix Elements
sensitivity3.dgCMatrix | Estimate Sensitivity of Population Growth Rate of a Single Matrix
sensitivity3.lefkoMat | Estimate Sensitivity of Population Growth Rate of a lefkoMat Object
sensitivity3.lefkoMatList | Estimate Sensitivity of Population Growth Rate of a lefkoMatList Object
sensitivity3.list | Estimate Sensitivity of Population Growth Rate of a List of Matrices
sensitivity3.matrix | Estimate Sensitivity of Population Growth Rate of a Single Matrix
sf_create | Create Stageframe for Population Matrix Projection Analysis
sf_distrib | Test Overdispersion and Zero Inflation in Size and Fecundity Distributions
sf_skeleton | Create Skeleton Stageframe
slambda3 | Estimate Stochastic Population Growth Rate
stablestage3 | Estimate Stable Stage Distribution
stablestage3.dgCMatrix | Estimate Stable Stage Distribution of a Single Population Projection Matrix
stablestage3.lefkoMat | Estimate Stable Stage Distribution of Matrices in lefkoMat Object
stablestage3.lefkoMatList | Estimate Stable Stage Distribution of Matrices in lefkoMatList Object
stablestage3.list | Estimate Stable Stage Distribution of a List of Projection Matrices
stablestage3.matrix | Estimate Stable Stage Distribution of a Single Population Projection Matrix
stage_weight | Create a Vector of Stage Weights for Density Dependence Calculations
start_input | Create a Starting Vector for Population Projection
subset_lM | Create New lefkoMat or lefkoMatList Object as Subset of Another
summary.lefkoCondMat | Summary of Class "lefkoCondMat"
summary.lefkoElas | Summarize lefkoElas Objects
summary.lefkoLTRE | Summarize lefkoLTRE Objects
summary.lefkoMat | Summary of Class "lefkoMat"
summary.lefkoMatList | Summary of Class "lefkoMatList"
summary.lefkoMod | Summary of Class "lefkoMod"
summary.lefkoProj | Summarize lefkoProj Objects
summary_hfv | Summary of Classes "hfvdata" and "hfvlist
supplemental | Create a Data Frame of Supplemental Data for MPM Development
sup_skeleton | Create A Supplement Skeleton Data Frame
usher3 | Two-Parameter Usher Function
verticalize3 | Create Historical Vertical Data Frame from Horizontal Data Frame
vrm_import | Import Vital Rate Model Factor Values for Function-based MPM Development