agp_gut                 American Gut Project gut microbiome dataset
asv.to.linf.csts        From counts to filtered, normalized, truncated
                        dCSTs
dcst.view               Select a stored dCST policy view
filter.asv              Filter ASV count matrix by library size
                        (samples) and prevalence (features)
latex.linf.csts         Render dCSTs as a LaTeX table
linf.csts               Truncated dominant community state types with
                        configurable low-support handling
linf.dcst.landmark.pipeline
                        Landmark-aware dCST pipeline
linf.dominant.features
                        Dominant-feature assignment
linf.feature.labels     Format feature labels for dominant-feature
                        assignments and dCSTs
linf.hypercube.embedding
                        Extended homogeneous-coordinate hypercube
                        embedding
linf.landmarks          Landmark points for dCST dominance-lineages
normalize.linf          L-infinity normalization (row-wise)
print.linf.csts         Print method for '"linf.csts"'
refine.linf.csts        Refine a dCST hierarchy by one level
refine.linf.csts.iter   Iteratively refine dCSTs by one additional
                        level
summary.linf.csts       Summarize dCST hierarchy statistics
transfer.dcsts          Transfer samples into a frozen dCST hierarchy
valencia13k_dcst_depth2_merged
                        Valencia 13k merged depth-2 dCST assignments
valencia13k_dcst_depth3_merged
                        Valencia 13k merged depth-3 dCST assignments
valencia2k              Valencia 2k vaginal microbiome dataset
valencia_linf_hypercube_1k
                        Valencia 1k four-component hypercube embedding
                        example
