# History Matching and Emulation Package

## Documentation for package ‘hmer’ version 1.6.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

analyze_diagnostic | Diagnostic Analysis for Emulators
behaviour_plot | Output Plotting
bimodal_emulator_from_data | Bimodal Emulation
BirthDeath | Birth-Death Model Results
classification_diag | Classification Diagnostics
collect_emulators | Collect and order emulators
comparison_diag | Comparison Diagnostics
Correlator | Correlation Structure
diagnostic_pass | Automated Diagnostics and Modifications
diagnostic_wrap | Diagnostic plots for wave outputs
directional_deriv | Derivative inner product
directional_proposal | Emulated Derivative Point Proposal
effect_strength | Find Effect Strength of Active Variables
Emulator | Bayes Linear Emulator
emulator_from_data | Generate Emulators from Data
emulator_plot | Plot Emulator Outputs
export_emulator_to_json | Export Emulators
exp_sq | Exponential squared correlation function
full_wave | Automatic Wave Calculation
gamma_exp | Gamma-exponential correlation function
generate_new_design | Generate Proposal Points
generate_new_runs | Generate Proposal Points
get_diagnostic | Diagnostic Tests for Emulators
HierarchicalEmulator | Hierarchical Bayes Linear Emulator
hit_by_wave | Output Hit Summary
idemc | IDEMC Point Generation
import_emulator_from_json | Import JSON Emulator Data
individual_errors | Predictive Error Plots
matern | Matern correlation function
maximin_sample | Generate Maximin Sample of Points
nth_implausible | nth Maximum Implausibility
orn_uhl | Ornstein-Uhlenbeck correlation function
output_plot | Emulator Expectation Against Target Outputs
plot_actives | Active variable plotting
plot_lattice | Plot Lattice of Emulator Implausibilities
plot_wrap | Plot proposed points
prin_vars | Determine Principle Outputs
problem_data | Data for an interesting emulation problem
Proto_emulator | Prototype Class for Emulator-like Objects
rat_quad | Rational Quadratic correlation function
residual_diag | Emulator Regression Residuals
simulator_plot | Plot simulator outputs for multiple waves
SIREmulators | Sample Emulators
SIRImplausibility | Sample Implausibility Data
SIRMultiWaveData | Sample Multi-wave Results
SIRMultiWaveEmulators | Sample Multi-wave Emulators
SIRSample | Sample SIR data
SIR_stochastic | Stochastic SIR Data
space_removal | Percentage of Space Removed
space_removed | Space Removal Diagnostics
standard_errors | Standardized Error Diagnostics
subset_emulators | Subsetting for Bimodal/Variance Emulators
summary_diag | Summary Statistics for Emulators
validation_diagnostics | Emulator Diagnostics
validation_pairs | Validation Set Diagnostics and Implausibility
variance_emulator_from_data | Variance Emulator Creation (Deprecated)
wave_dependencies | Multiple Wave Inputs vs Outputs
wave_points | Multiple Wave Point Plotting
wave_values | Multiple Wave Output Plotting