Package: SuperCell
Type: Package
Title: Simplification of scRNA-Seq Data by Merging Together Similar
        Cells
Version: 1.1
Authors@R: c(person("Mariia","Bilous",role="aut",email = "mariia.bilous@unil.ch"),person("Matei","Teleman",role="cre",email = "matei.teleman@unil.ch"))
Description: Aggregates large single-cell data into metacell dataset by merging together gene expression of very similar cells. 'SuperCell' uses 'velocyto.R' <doi:10.1038/s41586-018-0414-6> <https://github.com/velocyto-team/velocyto.R> for RNA velocity and 'WeightedCluster' <doi:10.12682/lives.2296-1658.2013.24> <https://mephisto.unige.ch/weightedcluster/> for weighted clustering on metacells. We also recommend installing 'scater' Bioconductor package <doi:10.18129/B9.bioc.scater> <https://bioconductor.org/packages/release/bioc/html/scater.html>.
License: GPL-3
BugReports: https://github.com/GfellerLab/SuperCell/issues
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
biocViews: Software
Additional_repositories: https://mteleman.github.io/drat2
Imports: igraph, RANN, corpcor, weights, Hmisc, Matrix, matrixStats,
        plyr, irlba, grDevices, patchwork, ggplot2, umap, entropy,
        Rtsne, dbscan, scales, plotfunctions, proxy, methods, rlang,
RoxygenNote: 7.3.3
Suggests: SingleCellExperiment, SummarizedExperiment, cowplot, scater,
        Seurat, knitr, rmarkdown, remotes, bluster, velocyto.R,
        WeightedCluster, testthat (>= 3.0.0)
Depends: R (>= 4.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-12-16 10:49:45 UTC; admin
Author: Mariia Bilous [aut],
  Matei Teleman [cre]
Maintainer: Matei Teleman <matei.teleman@unil.ch>
Repository: CRAN
Date/Publication: 2025-12-16 12:20:07 UTC
Built: R 4.4.3; ; 2026-01-16 06:06:28 UTC; windows
