937e516f26e6604d66d9440e4f339e42 *DESCRIPTION
6241625531821ba6c148e8563dea401a *NAMESPACE
0ce0cc6bbad91114e3e1310c495c0f19 *NEWS.md
eb7473c3185364f904f0747fe8e0ed21 *R/RcppExports.R
1c268c13af57fe4f27b218c6931c5a30 *R/basic_run.R
1de3398d4d1d0bb39293640e4db87502 *R/case_control_regression.R
980478458d3daf3b8e79d2f2d15cc835 *R/cox_regression.R
64103b0176aeab0d7f7c40a8608fb01e *R/logit_regression.R
a555bc39a89569b5077664ac5e01621e *R/obj_validate.R
ede875dcd84d71877201b27cf95077e8 *R/plot_types.R
73d6bd007cf6e3b9504d56f0c35ad399 *R/poisson_regression.R
e54558df2de0fc38655da1a06ac711f3 *R/surv_types.R
c33d5a6776a8a3d745072a746c37267f *R/table_functions.R
7d97090d7da41db79c1d9327d6deafa8 *R/utility.R
8401942875b8dd17118f19623ff33c49 *R/utils-roxygen.R
372519821a038138ea64f531368aec10 *R/zzz.R
4f0f9bebfd6ef21cd9581d7a5c782308 *README.md
db08aa857cb9d6ebe0bdde5746362bdd *build/vignette.rds
3ea7bc847f59041e36294c01ee49aec4 *configure
4b79944be94f6e58ee244ccca0939a50 *inst/CITATION
c2494a24a824d09770cc5a8548ec19d1 *inst/WORDLIST
7273c4156520231c78260c056dd7eae3 *inst/doc/Alt_Run_Opt.R
ebe3d0bdfd776a5786473b18f2c1f5bd *inst/doc/Alt_Run_Opt.Rmd
7859c0f847860e7066fb069e989e1f54 *inst/doc/Alt_Run_Opt.html
5e270ae6034b339c2a13d20a5f7d2dec *inst/doc/Control_Options.R
45e62a865896941d9881f03b0dc2d6ef *inst/doc/Control_Options.Rmd
e437940b304da383cb14f1dd498cd9a7 *inst/doc/Control_Options.html
7d90097a469133fca1ab31b2e4859227 *inst/doc/Dose_Formula_Inputs.R
db2b33dac288e1f63074ff979762615e *inst/doc/Dose_Formula_Inputs.Rmd
8a17d8d98fab114d0930f4ef0a5a4c79 *inst/doc/Dose_Formula_Inputs.html
f0a15b1eb929cd6809b992c09c4750ad *inst/doc/Equation_Expression.R
c5d847e883381b68e83ab51754af6c32 *inst/doc/Equation_Expression.Rmd
e81976df843c1bc05d9e003d153e777d *inst/doc/Equation_Expression.html
eaba0f63a9724e2bf5f02d164b0e96bf *inst/doc/Excess_and_Predicted_Cases.R
2fffc9e022fd2e74f52e45ec75d77c9d *inst/doc/Excess_and_Predicted_Cases.Rmd
9bfbbaf6b50426d4771446b8a27839ec *inst/doc/Excess_and_Predicted_Cases.html
8acb63e0b9767be0f5e57f32e81bef18 *inst/doc/Grad_Hess.R
edbe25e2b3efdf60ef8d6f89edffcc7f *inst/doc/Grad_Hess.Rmd
44a98ba31ac2ef5a19fba699f67f18e9 *inst/doc/Grad_Hess.html
1c95150093b42e723110490c3268ca37 *inst/doc/Logistic.R
ca42a9b0dacd3285f4d9df92ecae5e0e *inst/doc/Logistic.Rmd
c70a81b7325399468a22ebc3818be5a1 *inst/doc/Logistic.html
a30325a46c0ce2c21a1dbc1a102d91d9 *inst/doc/Matched_Case_Control.R
ae097da022599a367cc985f05a60ace6 *inst/doc/Matched_Case_Control.Rmd
e8acab6bad3de51f9c8188c3cc6b2140 *inst/doc/Matched_Case_Control.html
189e2a76c29bf4617268de9ed3ce8d02 *inst/doc/Multi_Realization.R
339d2d1d19236a3cfd92b9c5efe44a39 *inst/doc/Multi_Realization.Rmd
854be3039edcfd2e59067dfb0fa0e19a *inst/doc/Multi_Realization.html
2ce1f3f0e5e85ccebd409cd8cbc76237 *inst/doc/Plotting_And_Analysis.R
94caf128406c0007f4cbeadd4e29e672 *inst/doc/Plotting_And_Analysis.Rmd
8ca78c89e29969e56ddcb188690e8bf9 *inst/doc/Plotting_And_Analysis.html
05c27e3eb5601002fd80fdd3c13e0383 *inst/doc/Residual.R
5c3f7a00f8dca0d3c7559a52a39e5fd2 *inst/doc/Residual.Rmd
0746000d4bd2771761694a9ed09b5b5d *inst/doc/Residual.html
528e266180e78b13e32b8f65391821e0 *inst/doc/SMR_Analysis.R
48200751c0ed5a27213000caf10e0536 *inst/doc/SMR_Analysis.Rmd
54bb5fc0d6b857997160fd261fd586a4 *inst/doc/SMR_Analysis.html
a533a5512e9a8a75588baa6476c3a5e9 *inst/doc/Script_Comparison_Epicure.R
7acdd3fb914945cc6a1a9959860ef80e *inst/doc/Script_Comparison_Epicure.Rmd
7c214cf46189ef5b77c7bd49709525a6 *inst/doc/Script_Comparison_Epicure.html
fe6eee14c37bf8f14b7f714a7763413c *inst/doc/Starting-Description.R
390207f363e65fd77bf1100dd50fa1be *inst/doc/Starting-Description.Rmd
0fe99bd0332e08dec94b63bbb61a9bcf *inst/doc/Starting-Description.html
d8574f75caeb9b0af699605261c44619 *inst/doc/Time_Dep_Cov.R
e4b89b8188516ba10574ad987e56354e *inst/doc/Time_Dep_Cov.Rmd
e7bba307915204f94e1f67e3148e45b7 *inst/doc/Time_Dep_Cov.html
ba5444f6b637e5d1f9e79dbfd2c161a3 *inst/doc/Wald_and_Log_Bound.R
90d1685b07b6f52acc4900b19a6eaa95 *inst/doc/Wald_and_Log_Bound.Rmd
47b057a0223d42086fdadd65646a3dd3 *inst/doc/Wald_and_Log_Bound.html
0d78561ffc986cf9c981c77e62ecadc2 *inst/doc/count_time_tables.R
547c93e9fa023af7c919a0accd3549dd *inst/doc/count_time_tables.Rmd
41b4044aadf5b419255c8404cb7630c9 *inst/doc/count_time_tables.html
2b44b6ce55fc106917ee9b85050f7e81 *man/CaseControlRun.Rd
4c773d8e07f28b0a681a54d2c8b08115 *man/CoxRun.Rd
ce96dace56053bc439756e6af4164177 *man/CoxRunMulti.Rd
b75cda04f0cefdf809325650fe49dca8 *man/Date_Shift.Rd
6489edbc4a8157c62652701928280fee *man/EventAssignment.Rd
cd558b4beaca13c4d6d079906b60cc24 *man/EventAssignment.poisres.Rd
21f5ea320d611755a0c65406d984e646 *man/EventAssignment.poisresbound.Rd
235c13cc08bf700fc463e010538b47a5 *man/Event_Count_Gen.Rd
02affc0792fafe2c43b7873034ae27ba *man/Event_Time_Gen.Rd
9f57d3ed7540f2bc005a0459a66fea84 *man/Joint_Multiple_Events.Rd
ff3a2122c12bd5d93efc81d53bc8cb80 *man/LikelihoodBound.Rd
0b666905e934509293736027336770bc *man/LikelihoodBound.coxres.Rd
5e6d3008ab4e723ee1c0fb8068a295b4 *man/LikelihoodBound.logitres.Rd
3fe0973b937ed2d9439db8d2d6d2dd3f *man/LikelihoodBound.poisres.Rd
7f0c167c668541dfff04120558cf4e27 *man/Likelihood_Ratio_Test.Rd
6e5518d527ab4849a7413f27e583b014 *man/Linked_Dose_Formula.Rd
a31df1226378dd557a83338e2692c82d *man/Linked_Lin_Exp_Para.Rd
5a69274ea0aaf3b36a8ec641715efd42 *man/LogisticRun.Rd
17cfd8e05b40c72201450b847565cafd *man/LogisticRunMulti.Rd
25761ac8a76d7e33fa275ae7fd50f98b *man/LogisticRunMultiOut.Rd
6fa504de34b7d0e9d46ed8fa1b598603 *man/OMP_Check.Rd
d17fbce7615e8251ff137b75cac387e8 *man/PoisRun.Rd
23db0263d1b013ab698180689065f5e2 *man/PoisRunJoint.Rd
41d2c6e99f69908192e3868af721623d *man/PoisRunMulti.Rd
d582536a086e3f76f1175f15753c9970 *man/PoisRunMultiOut.Rd
7c5a3b70f34ca2cc3511edf2a85a3fcf *man/RelativeRisk.Rd
467475278399ab3dcd622efeede1ebec *man/RelativeRisk.coxmodel.Rd
30e1055a2cec49d85a351632cdb405a2 *man/RelativeRisk.coxres.Rd
b4a9136e7f238cfa6a5010eecac0fb02 *man/RelativeRisk.formula.Rd
c16988b7f35c9163fa317ef84d3c534d *man/Replace_Missing.Rd
eae3a5ce4ed4ef5d9aa3441d5186ed9a *man/Residual.Rd
d832a22d7b7aac44d7f4dba03970dcff *man/Residual.logitmodel.Rd
3b1efb2d8f849676ef5bac0fc389fb80 *man/Residual.logitres.Rd
504ee0cfd7fc67e89cc524b8b8e9f946 *man/Residual.poismodel.Rd
ca25cd5956225bddc7c8660d23fb247f *man/Residual.poisres.Rd
3e0b1ac9fdf64e39b86ab3c60c048113 *man/System_Version.Rd
b5548cf7d8411890a4903783890358af *man/Time_Since.Rd
f63392ea57065d305d00ac46206bd7d1 *man/factorize.Rd
51d93914004520b8f2c13ad8971c15f5 *man/figures/logo.png
471b5ed72d3d1254765987b33e883e3f *man/gen_time_dep.Rd
9e941ecc6a2fde3bbb27d79afa363f64 *man/get_form.Rd
e3811f1f3624d8468f6140c2596c27ef *man/get_form_joint.Rd
3283fab71fe15d59be715baeb596b815 *man/plot.coxres.Rd
7ec52daa2bcc3d54956b690c177632ae *man/plotMartingale.Rd
dc681797b5b11604fa503b621e8b8657 *man/plotMartingale.coxres.Rd
eb49d16a3cdef97261c69cd1b929d0f7 *man/plotRisk.Rd
e3a6a9697ad477dfbb66002710228253 *man/plotRisk.coxres.Rd
2bc86943775f473daf92e2d0155c3352 *man/plotSchoenfeld.Rd
f2c79ee225a337dea08915e62852354d *man/plotSchoenfeld.coxres.Rd
c95e83327cfb67334062ee7d23fa5640 *man/plotSurvival.Rd
93055d69b89859837e81eb39e2953b01 *man/plotSurvival.coxres.Rd
ce588cb1a18174511eadb444ed110c16 *src/Calc_Repeated.cpp
b8b2541f812191b76be127d8a79aca35 *src/Calc_Repeated.h
eef451434cde21ecf998fa3a7341652e *src/Colossus_types.h
18ac8b0ab0b8de92a14dd0da5fa06330 *src/Grouping.cpp
52743b31a5efb8993e96bd74fd92a1b2 *src/Grouping.h
d387112a027212916a7267d063fb28e5 *src/Main_Bound.cpp
db44228caa92ca0d2e9794fc6a41e13b *src/Main_Bound.h
0b480e97cc69bf1ee35a00567db7073a *src/Main_Functions.cpp
9af29d442cddd6002dc646a1afde7df5 *src/Main_Functions.h
3518702ccda03c80092abd61c3264c46 *src/Main_Multi.cpp
3a331cf145e4881d7ee62fb471244614 *src/Main_Multi.h
239cc29af5d8614c47db237cdd99a71b *src/Makevars
47f2870dd1165f2fbb2565b82fbd9630 *src/Makevars.win
52265003a14b6e1c0c83eb0c765101a2 *src/Omnibus_Pieces.cpp
86ee067d21dbab09806abc24c33fbc45 *src/Omnibus_Pieces.h
7f91d112f021889c9c466810ccc5b602 *src/Plot_Extensions.cpp
8f21006945c8a0cae7a4dba9c4e0d0e6 *src/Plot_Extensions.h
22ff361d54796c59ce881b39760d2ab8 *src/R_Interface.cpp
637719e68def1043af5bee7cd2acc0c5 *src/R_Interface.h
dc03f7b05c7a2e08288833052540d563 *src/RcppExports.cpp
881a8841758a63ef8c0024c3df21b5bd *src/Step_Bound.cpp
527992e2efd409681027828b2ccc4f86 *src/Step_Bound.h
ff81c3759d56052bbb7f60bb52c7e0cb *src/Step_Grad.cpp
1a3ceffcd42c9a8d99cc5d0fd4bd4fb3 *src/Step_Grad.h
951870a573f893312fb7a09844246eb2 *src/Step_Newton.cpp
450b0d1fd2e8c7b76a43209733e00e66 *src/Step_Newton.h
72bbd7c6b6120e6112c07a96ecd35422 *src/Subterms_Risk.cpp
f509cd4ae8e6f5d8709167b1c6c338de *src/Subterms_Risk.h
50f330eeca8db092d6807e04457bd06d *tests/spelling.R
0350350391ab30b3e0a0ec3353cc8b7c *tests/testthat.R
25c6bb41e6ad82db306a1f06bad00847 *tests/testthat/Assigned_Check.csv
60e01a966792bc8d7f6e27124dc8f029 *tests/testthat/MULTI_COV.csv
96831dc35f40c757538a7ac7a97536dd *tests/testthat/base_example.csv
44efefec3c4c2c8c075996d5b82a8960 *tests/testthat/dose.csv
c2d2fe68f1664d6b7c6fd77cd2de9916 *tests/testthat/l_pl_0.csv
e34d071e947b48c8c0328aaf56928956 *tests/testthat/l_pl_A_0.csv
ff21327faf666f2def06035a8592e761 *tests/testthat/ll_0.csv
fc69bff3eb2f66b8cedcf86a832666c9 *tests/testthat/ll_cens_0.csv
f8a0597d561e296f39774a158f310277 *tests/testthat/ll_comp_0.csv
750e11faea7d643b0017356558841531 *tests/testthat/sholom.csv
eadaf8a87b44ce066b9bfdaa270859d9 *tests/testthat/test-Assigned.R
8a4bd8885ae0c7d68ddf8b72c55b5f4f *tests/testthat/test-CaseControl.R
393cec8d3a854520d8bb0aaa591a52ac *tests/testthat/test-CoxPlot.R
e227d3a0d1629bbb1618481ea7944c3a *tests/testthat/test-CoxRegression.R
de54a02c7ce7540e4d3a60a02f90ea27 *tests/testthat/test-DegreeFree.R
377300d6e3aa32d63ff23d2acec28999 *tests/testthat/test-Formula.R
b49c64b80c32590d8d7b2417e4cb7127 *tests/testthat/test-Gradient.R
ad958a4327d58ec8da072f0c06cccd40 *tests/testthat/test-Joint.R
9296e13e5b850fae4182ad2f464d9223 *tests/testthat/test-Logbound.R
e90b8616a7e0e5667e571a457ec72517 *tests/testthat/test-Logit.R
0c931e9f53b41fb300af1c1a355a406e *tests/testthat/test-Multidose.R
dac4f444b8ccab6cac0e9fb6389cc5e5 *tests/testthat/test-Multiout.R
2bb4a3242a8f2fcbdc1d6a120c506d70 *tests/testthat/test-Norm.R
4a729e393ade8580920597fd8d2ea9a9 *tests/testthat/test-Omnibus.R
1e90e8c117db893bcc2fbcbb24d9d611 *tests/testthat/test-PoissonRegression.R
428aeb1dc44b592a1b91043793a5dbb6 *tests/testthat/test-Residual.R
070989931766e044cc2a7ec47759ed9b *tests/testthat/test-Table.R
b23a5efe7d24d6f32f3c1dbd1c44106b *tests/testthat/test-Utility.R
ebe3d0bdfd776a5786473b18f2c1f5bd *vignettes/Alt_Run_Opt.Rmd
45e62a865896941d9881f03b0dc2d6ef *vignettes/Control_Options.Rmd
db2b33dac288e1f63074ff979762615e *vignettes/Dose_Formula_Inputs.Rmd
c5d847e883381b68e83ab51754af6c32 *vignettes/Equation_Expression.Rmd
2fffc9e022fd2e74f52e45ec75d77c9d *vignettes/Excess_and_Predicted_Cases.Rmd
edbe25e2b3efdf60ef8d6f89edffcc7f *vignettes/Grad_Hess.Rmd
ca42a9b0dacd3285f4d9df92ecae5e0e *vignettes/Logistic.Rmd
ae097da022599a367cc985f05a60ace6 *vignettes/Matched_Case_Control.Rmd
339d2d1d19236a3cfd92b9c5efe44a39 *vignettes/Multi_Realization.Rmd
94caf128406c0007f4cbeadd4e29e672 *vignettes/Plotting_And_Analysis.Rmd
5c3f7a00f8dca0d3c7559a52a39e5fd2 *vignettes/Residual.Rmd
48200751c0ed5a27213000caf10e0536 *vignettes/SMR_Analysis.Rmd
7acdd3fb914945cc6a1a9959860ef80e *vignettes/Script_Comparison_Epicure.Rmd
390207f363e65fd77bf1100dd50fa1be *vignettes/Starting-Description.Rmd
e4b89b8188516ba10574ad987e56354e *vignettes/Time_Dep_Cov.Rmd
90d1685b07b6f52acc4900b19a6eaa95 *vignettes/Wald_and_Log_Bound.Rmd
547c93e9fa023af7c919a0accd3549dd *vignettes/count_time_tables.Rmd
2aa53a05d43836fa9155d9c80531c4b1 *vignettes/mystyle.css
