Last updated on 2025-04-14 01:52:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9 | 2.08 | 32.43 | 34.51 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2 | 1.67 | 37.19 | 38.86 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2 | NOTE | ||||
| r-devel-macos-arm64 | 1.2 | 59.00 | OK | |||
| r-devel-macos-x86_64 | 1.2 | 76.00 | OK | |||
| r-devel-windows-x86_64 | 0.9 | 4.00 | 126.00 | 130.00 | OK | |
| r-patched-linux-x86_64 | 0.9 | 2.09 | 44.50 | 46.59 | OK | |
| r-release-linux-x86_64 | 1.2 | 2.05 | 32.01 | 34.06 | ERROR | |
| r-release-macos-arm64 | 1.2 | 45.00 | OK | |||
| r-release-macos-x86_64 | 1.2 | 102.00 | OK | |||
| r-release-windows-x86_64 | 1.2 | 6.00 | 82.00 | 88.00 | OK | |
| r-oldrel-macos-arm64 | 1.2 | 64.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2 | 112.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.9 | 5.00 | 134.00 | 139.00 | OK |
Version: 0.9
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE3268", FALSE, FALSE)
Error in open.connection(x, "rb") : cannot open the connection
Calls: getGeneExpressionFromGEO -> <Anonymous> -> read_html.default
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘qpdf’
All declared Imports should be used.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE47018", FALSE, FALSE)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/
Error in open.connection(x, "rb") : cannot open the connection
Calls: getGeneExpressionFromGEO -> <Anonymous> -> read_html.default
Execution halted
Flavor: r-release-linux-x86_64