CRAN Package Check Results for Maintainer ‘Karline Soetaert <Karline.Soetaert at nioz.nl>’

Last updated on 2025-10-07 01:49:08 CEST.

Package ERROR NOTE OK
AquaEnv 13
diagram 2 11
ecolMod 2 11
FME 1 12
limSolve 13
marelac 13
NetIndices 2 11
OceanView 13
plot3D 13
plot3Drgl 13
ReacTran 13
rootSolve 13
shape 2 11

Package AquaEnv

Current CRAN status: NOTE: 13

Version: 1.0-4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Karline Soetaert <Karline.Soetaert@nioz.nl>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Andreas", "F."), family = "Hofmann", role = "aut"), person(given = "Karline", family = "Soetaert", role = c("aut", "cre"), email = "karline.soetaert@nioz.nl"), person(given = c("Filip", "J.R."), family = "Meysman", role = "aut"), person(given = "Mathilde", family = "Hagens", role = "aut")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0-4
Check: Rd files
Result: NOTE checkRd: (-1) BufferFactors.Rd:33: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:34: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:35: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:36: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:37: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:38: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:40: Escaped LaTeX specials: \_ \_ checkRd: (-1) BufferFactors.Rd:42: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:44: Escaped LaTeX specials: \_ checkRd: (-1) K0_CO2.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K0_O2.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_BOH3.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_BOH3.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_BOH3.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_CO2.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_CO2.Rd:16: Escaped LaTeX specials: \_ checkRd: (-1) K_CO2.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) K_H2PO4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_H2PO4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_H2PO4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_H2S.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_H2S.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_H2S.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_H3PO4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_H3PO4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_H3PO4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_HCO3.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_HCO3.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) K_HCO3.Rd:18: Escaped LaTeX specials: \_ checkRd: (-1) K_HF.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_HF.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) K_HPO4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_HPO4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_HPO4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_HSO4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_NH4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_NH4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_NH4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOH4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOH4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOH4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOOH3.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOOH3.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOOH3.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_W.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_W.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_W.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) Ksp_aragonite.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) Ksp_calcite.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) PhysChemConst.Rd:9: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:4: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:24: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:31: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:32: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) TAfit.Rd:33: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:34: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:35: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:36: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:40: Escaped LaTeX specials: \_ \_ checkRd: (-1) TAfit.Rd:42: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:52: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:53: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:54: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:55: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:56: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:57: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:59: Escaped LaTeX specials: \_ \_ checkRd: (-1) aquaenv.Rd:61: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:63: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:258: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:259: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:260: Escaped LaTeX specials: \_ \_ checkRd: (-1) aquaenv.Rd:261: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:262: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:263: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:264: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:265: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:266: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:267: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:277: Escaped LaTeX specials: \_ \_ checkRd: (-1) convert.Rd:18: Escaped LaTeX specials: \_ checkRd: (-1) convert.Rd:19: Escaped LaTeX specials: \_ checkRd: (-1) gauge_p.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:16: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:23: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:24: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:25: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:26: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:27: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:28: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson2007.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson2007.Rd:16: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson2007.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:24: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:25: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) titration.Rd:26: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:27: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:28: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:29: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:30: Escaped LaTeX specials: \_ \_ checkRd: (-1) titration.Rd:31: Escaped LaTeX specials: \_ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package diagram

Current CRAN status: NOTE: 2, OK: 11

Version: 1.6.5
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Karline", family = "Soetaert", role = c("aut", "cre"), email = "karline.soetaert@nioz.nl") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package ecolMod

Current CRAN status: NOTE: 2, OK: 11

Version: 1.2.6.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Karline", family = "Soetaert", role = c("aut", "cre"), email = "karline.soetaert@nioz.nl"), person(given = c("Peter", "MJ"), family = "Herman", role = "aut", email = "peter.herman@nioz.nl")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package FME

Current CRAN status: ERROR: 1, OK: 12

Version: 1.3.6.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'FME.Rnw' using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter --- finished re-building 'FME.Rnw' --- re-building 'FMEdyna.Rnw' using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter --- finished re-building 'FMEdyna.Rnw' --- re-building 'FMEmcmc.Rnw' using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "FMEmcmc.tex" --max-iterations=20' had status 1 Error: processing vignette 'FMEmcmc.Rnw' failed with diagnostics: Failed to locate 'texi2pdf' output file 'FMEmcmc.pdf' for vignette with name 'FMEmcmc' and engine 'utils::Sweave'. The following files exist in working directory 'D:\RCompile\CRANpkg\local\4.5\FME.Rcheck\vign_test\FME\vignettes': 'FME-HIV.pdf' (320096 bytes), 'FME-collfig.pdf' (4702 bytes), 'FME-costfig.pdf' (4389 bytes), 'FME-crlfig.pdf' (186065 bytes), 'FME-fitfig.pdf' (8507 bytes), 'FME-mcmcfig.pdf' (209908 bytes), 'FME-mcmcfig2.pdf' (475189 bytes), 'FME-odefig.pdf' (9204 bytes), 'FME-sf.pdf' (5744 bytes), 'FME-sfunfig.pdf' (6458 bytes), 'FME-sfunpfig.pdf' (46620 bytes), 'FME-srfig.pdf' (8615 bytes), 'FME.Rnw' (53557 bytes), 'FME.aux' (8616 bytes), 'FME.bbl' (10166 bytes), 'FME.blg' (1114 bytes), 'FME.log' (28469 bytes), 'FME.out' (2302 bytes), 'FME.pdf' (1.8909e+06 bytes), 'FME.tex' (58040 bytes), 'FMEdyna-collfig.pdf' (4538 bytes), 'FMEdyna-crl2fig.pdf' (31312 bytes), 'FMEdyna-crlfig.pdf' (16547 bytes), 'FMEdyna-cumuplot.pdf' (25373 bytes), 'FMEdyna-distfig.pdf' (73887 bytes), 'FMEdyna-fitfig.pdf' (6223 bytes), 'FMEdyna-mcmcfig.pdf' (38506 bytes), 'FMEdyna-mcmcfig2.pdf' (27643 bytes), 'FMEdyna-odefig.pdf' (6086 bytes), 'FMEdyna-pairsfig.pdf' (59941 bytes), 'FMEdyna-resfig.pdf' (4443 bytes), 'FMEdyna-sensfig.pdf' (13388 bytes), 'FMEdyna-sensfig2.pdf' (7351 bytes), 'FMEdyna-sfunfig.pdf' (6674 bytes), 'FMEdyna.Rnw' (27531 bytes), 'FMEdyna.aux' (5932 bytes), 'FMEdyna.bbl' (3748 bytes), 'FMEdyna.blg' (1104 bytes), 'FMEdyna.log' (33296 bytes), 'FMEdyna.out' (2951 bytes), 'FMEdyna.pdf' (789236 bytes), 'FMEdyna.tex' (40784 bytes), 'FMEmcmc-ABMCMC.pdf' (78384 bytes), 'FMEmcmc-ABMCMC2.pdf' (64407 bytes), 'FMEmcmc-ABMCMC3.pdf' (51144 bytes), 'FMEmcmc-Monmcmc.pdf' (35618 bytes), 'FMEmcmc-Monmcmc2.pdf' (28253 bytes), 'FMEmcmc-banana2.pdf' (186536 bytes), 'FMEmcmc-hist.pdf' (7843 bytes), 'FMEmcmc-hist1.pdf' (21661 bytes), 'FMEmcmc-logp.pdf' (41797 bytes), 'FMEmcmc-logp1.pdf' (42794 bytes), 'FMEmcmc-obs.pdf' (7438 bytes), 'FMEmcmc-sr.pdf' (6644 bytes), 'FMEmcmc.Rnw' (25317 bytes), 'FMEmcmc.tex' (33202 bytes), 'FMEother.Rnw' (9798 bytes), 'FMEsteady.Rnw' (12465 bytes), 'Rplots.pdf' (630784 bytes), 'mcmc.Rdata' (89187 bytes), 'vignettes.bib' (12810 bytes) --- failed re-building 'FMEmcmc.Rnw' --- re-building 'FMEother.Rnw' using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter --- finished re-building 'FMEother.Rnw' --- re-building 'FMEsteady.Rnw' using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter --- finished re-building 'FMEsteady.Rnw' SUMMARY: processing the following file failed: 'FMEmcmc.Rnw' Error: Vignette re-building failed. Execution halted Flavor: r-release-windows-x86_64

Package limSolve

Current CRAN status: OK: 13

Package marelac

Current CRAN status: OK: 13

Package NetIndices

Current CRAN status: NOTE: 2, OK: 11

Version: 1.4.4.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Karline", family = "Soetaert", role = c("aut", "cre"), email = "karline.soetaert@nioz.nl"), person(given = c("Julius", "Kipyegon"), family = "Kones", role = "aut", email = "jkones@uonbi.ac.ke"), person(given = "Dick", family = "van Oevelen", role = "aut", email = "dick.vanoevelen@nioz.nl")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package OceanView

Current CRAN status: OK: 13

Package plot3D

Current CRAN status: OK: 13

Package plot3Drgl

Current CRAN status: OK: 13

Package ReacTran

Current CRAN status: OK: 13

Package rootSolve

Current CRAN status: OK: 13

Package shape

Current CRAN status: NOTE: 2, OK: 11

Version: 1.4.6.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Karline", family = "Soetaert", role = c("aut", "cre"), email = "karline.soetaert@nioz.nl") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc