Last updated on 2026-01-24 01:49:33 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| BimodalIndex | 13 | ||
| ClassComparison | 13 | ||
| ClassDiscovery | 13 | ||
| CloneSeeker | 5 | 8 | |
| CrossValidate | 13 | ||
| GenAlgo | 13 | ||
| integIRTy | 13 | ||
| Mercator | 13 | ||
| Modeler | 13 | ||
| NameNeedle | 13 | ||
| NewmanOmics | 13 | ||
| oompaBase | 13 | ||
| oompaData | 13 | ||
| PCDimension | 13 | ||
| plasma | 1 | 12 | |
| Polychrome | 13 | ||
| PreProcess | 13 | ||
| RCytoGPS | 5 | 8 | |
| RPointCloud | 13 | ||
| SIBERG | 13 | ||
| SillyPutty | 13 | ||
| SVAlignR | 13 | ||
| TailRank | 13 | ||
| Thresher | 13 | ||
| Umpire | 13 | ||
| WayFindR | 13 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 1.0.13
Check: tests
Result: NOTE
Running ‘test01-Simplex.R’ [3s/3s]
Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK
Running ‘test02-WV.R’ [2s/4s]
Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK
Running ‘test03-simulate.R’ [36s/47s]
Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...69c69
< NAs :428
---
> NA's :428
71c71
< Mode NAs
---
> Mode NA's
127c127
< NAs :282
---
> NA's :282
129c129
< Mode NAs
---
> Mode NA's
151c151
< NAs :340
---
> NA's :340
230c230
< NAs :1e+06
---
> NA's :1e+06
Running ‘test04-algorithm.R’ [93s/116s]
Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...181c181
< Mode NAs
---
> Mode NA's
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.13
Check: tests
Result: NOTE
Running ‘test01-Simplex.R’ [2s/3s]
Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK
Running ‘test02-WV.R’ [2s/3s]
Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK
Running ‘test03-simulate.R’ [22s/25s]
Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...69c69
< NAs :428
---
> NA's :428
71c71
< Mode NAs
---
> Mode NA's
127c127
< NAs :282
---
> NA's :282
129c129
< Mode NAs
---
> Mode NA's
151c151
< NAs :340
---
> NA's :340
230c230
< NAs :1e+06
---
> NA's :1e+06
232,236c232,236
< Min. : 12.00 Length :1e+06
< 1st Qu.: 61.00 N.unique :1e+00
< Median : 70.00 N.blank :0e+00
< Mean : 70.24 Min.nchar:8e+00
< 3rd Qu.: 80.00 Max.nchar:8e+00
---
> Min. : 12.00 Length:1000000
> 1st Qu.: 61.00 Class :character
> Median : 70.00 Mode :character
> Mean : 70.24
> 3rd Qu.: 80.00
Running ‘test04-algorithm.R’ [55s/61s]
Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...161,164c161,164
< 1st Qu.: NA 1st Qu.: NA N.unique : 0
< Median : NA Median : NA N.blank : 0
< Mean :NaN Mean :NaN Min.nchar: Inf
< 3rd Qu.: NA 3rd Qu.: NA Max.nchar:-Inf
---
> 1st Qu.: NA 1st Qu.: NA Class :character
> Median : NA Median : NA Mode :character
> Mean :NaN Mean :NaN
> 3rd Qu.: NA 3rd Qu.: NA
181c181
< Mode NAs
---
> Mode NA's
229,232c229,232
< 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1
< Median :0.3333 Median :131.5 N.blank : 0
< Mean :0.3375 Mean :137.0 Min.nchar: 7
< 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7
---
> 1st Qu.:0.2914 1st Qu.:122.2 Class :character
> Median :0.3333 Median :131.5 Mode :character
> Mean :0.3375 Mean :137.0
> 3rd Qu.:0.3632 3rd Qu.:156.0
244,246d243
< Warning messages:
< 1: In min(ncs) : no non-missing arguments to min; returning Inf
< 2: In max(ncs) : no non-missing arguments to max; returning -Inf
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.13
Check: tests
Result: NOTE
Running ‘test01-Simplex.R’
Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK
Running ‘test02-WV.R’
Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK
Running ‘test03-simulate.R’ [55s/98s]
Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...69c69
< NAs :428
---
> NA's :428
71c71
< Mode NAs
---
> Mode NA's
127c127
< NAs :282
---
> NA's :282
129c129
< Mode NAs
---
> Mode NA's
151c151
< NAs :340
---
> NA's :340
230c230
< NAs :1e+06
---
> NA's :1e+06
Running ‘test04-algorithm.R’ [158s/408s]
Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...181c181
< Mode NAs
---
> Mode NA's
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.13
Check: tests
Result: NOTE
Running ‘test01-Simplex.R’ [4s/12s]
Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK
Running ‘test02-WV.R’ [4s/11s]
Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK
Running ‘test03-simulate.R’ [61s/225s]
Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...69c69
< NAs :428
---
> NA's :428
71c71
< Mode NAs
---
> Mode NA's
127c127
< NAs :282
---
> NA's :282
129c129
< Mode NAs
---
> Mode NA's
151c151
< NAs :340
---
> NA's :340
230c230
< NAs :1e+06
---
> NA's :1e+06
Running ‘test04-algorithm.R’ [164s/512s]
Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...181c181
< Mode NAs
---
> Mode NA's
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.13
Check: tests
Result: NOTE
Running 'test01-Simplex.R' [2s]
Comparing 'test01-Simplex.Rout' to 'test01-Simplex.Rout.save' ... OK
Running 'test02-WV.R' [2s]
Comparing 'test02-WV.Rout' to 'test02-WV.Rout.save' ... OK
Running 'test03-simulate.R' [29s]
Comparing 'test03-simulate.Rout' to 'test03-simulate.Rout.save' ...69c69
< NAs :428
---
> NA's :428
71c71
< Mode NAs
---
> Mode NA's
127c127
< NAs :282
---
> NA's :282
129c129
< Mode NAs
---
> Mode NA's
151c151
< NAs :340
---
> NA's :340
230c230
< NAs :1e+06
---
> NA's :1e+06
Running 'test04-algorithm.R' [71s]
Comparing 'test04-algorithm.Rout' to 'test04-algorithm.Rout.save' ...181c181
< Mode NAs
---
> Mode NA's
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.5
Check: examples
Result: ERROR
Running examples in 'plasma-Ex.R' failed
The error most likely occurred in:
> ### Name: MultiplePLSCoxModels-class
> ### Title: Class '"MultiplePLSCoxModels"'
> ### Aliases: MultiplePLSCoxModels MultiplePLSCoxModels-class
> ### summary,MultiplePLSCoxModels-method
> ### [,MultiplePLSCoxModels,ANY,ANY,ANY-method
> ### plot,MultiplePLSCoxModels,missing-method
> ### predict,MultiplePLSCoxModels-method validMultipleCoxModels
> ### fitCoxModels getSizes
> ### Keywords: classes
>
> ### ** Examples
>
> fls <- try(loadESCAdata())
Warning in load(U, env) :
cannot open URL 'http://silicovore.com/data/TCGA-ESCA.RData': HTTP status was '500 Internal Server Error'
Error in load(U, env) :
cannot open the connection to 'http://silicovore.com/data/TCGA-ESCA.RData'
> if (inherits(fls, "try-error")) {
+ stop("Unable to load data from remote server.")
+ }
Error: Unable to load data from remote server.
Execution halted
Flavor: r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 1.2.9
Check: tests
Result: NOTE
Running ‘test01-chrom.R’ [0s/1s]
Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK
Running ‘test02-gb.R’ [0s/1s]
Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK
Running ‘test03-objects.R’ [30s/41s]
Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK
Running ‘test100-read.R’ [1s/2s]
Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ... OK
Running ‘test101-preclean.R’ [0s/1s]
Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ...22c22
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
25c25
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
Running ‘testclip.R’ [1s/1s]
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.9
Check: tests
Result: NOTE
Running ‘test01-chrom.R’ [0s/1s]
Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK
Running ‘test02-gb.R’ [0s/0s]
Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK
Running ‘test03-objects.R’ [19s/23s]
Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK
Running ‘test100-read.R’ [1s/1s]
Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ... OK
Running ‘test101-preclean.R’ [0s/0s]
Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ...22c22
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
25c25
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
Running ‘testclip.R’ [1s/1s]
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.9
Check: tests
Result: NOTE
Running ‘test01-chrom.R’
Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK
Running ‘test02-gb.R’
Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK
Running ‘test03-objects.R’ [48s/83s]
Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK
Running ‘test100-read.R’
Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ... OK
Running ‘test101-preclean.R’
Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ...22c22
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
25c25
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
Running ‘testclip.R’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.9
Check: tests
Result: NOTE
Running ‘test01-chrom.R’
Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK
Running ‘test02-gb.R’
Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK
Running ‘test03-objects.R’ [49s/169s]
Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK
Running ‘test100-read.R’
Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ... OK
Running ‘test101-preclean.R’
Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ...22c22
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
25c25
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
Running ‘testclip.R’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.9
Check: tests
Result: NOTE
Running 'test01-chrom.R' [1s]
Comparing 'test01-chrom.Rout' to 'test01-chrom.Rout.save' ... OK
Running 'test02-gb.R' [0s]
Comparing 'test02-gb.Rout' to 'test02-gb.Rout.save' ... OK
Running 'test03-objects.R' [34s]
Comparing 'test03-objects.Rout' to 'test03-objects.Rout.save' ... OK
Running 'test100-read.R' [1s]
Comparing 'test100-read.Rout' to 'test100-read.Rout.save' ... OK
Running 'test101-preclean.R' [0s]
Comparing 'test101-preclean.Rout' to 'test101-preclean.Rout.save' ...22c22
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
25c25
< Mode FALSE TRUE NAs
---
> Mode FALSE TRUE NA's
Running 'testclip.R' [1s]
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13