Last updated on 2026-01-17 02:52:17 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.32 | 807.95 | 845.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 21.55 | 533.73 | 555.28 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 71.00 | 1391.17 | 1462.17 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 63.00 | 1359.21 | 1422.21 | ERROR | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 585.00 | 622.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 50.91 | 731.70 | 782.61 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 38.01 | 740.60 | 778.61 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 542.00 | 579.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 120.00 | 128.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 723.00 | 748.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 60.00 | 700.00 | 760.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [14m/16m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-01-16 22:05:21.815205: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:21.816333: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:21.880473: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:22.007429: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:22.420367: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:22.421148: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:22.469606: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:22.607865: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:22.779737: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:22.79887: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:22.859703: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:23.027447: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:23.03655: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:23.203577: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:23.212435: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:23.302503: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:23.55887: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:23.569044: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:24.260534: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:24.270543: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:24.412566: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:24.947395: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:25.163729: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:25.164835: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:25.377753: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:26.60285: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:26.618121: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:27.536823: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:27.537541: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:27.583538: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:27.698513: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:27.926834: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:27.927844: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:28.021658: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:28.247099: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:28.257413: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:29.103546: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:29.104297: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:29.141062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:29.247646: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:29.573888: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:29.579118: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:29.642315: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:29.875218: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:29.877158: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:30.432383: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:30.433199: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:30.486057: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:30.59295: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:30.954118: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:30.958241: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:31.029858: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:31.236144: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:31.247053: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:31.679509: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:31.680192: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:31.715408: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:31.838906: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:32.114463: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:32.115437: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:32.185631: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:32.38537: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:32.393699: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:32.908178: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:32.908879: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:32.947248: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:33.013079: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:33.363797: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:33.364773: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:33.458: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:33.727677: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:33.72955: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:34.332661: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:34.333369: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:34.389004: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:34.509156: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:35.174591: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:35.176275: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:35.234699: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:35.329922: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:35.485867: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:35.486547: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:35.52283: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:35.61907: Classical Scaling
Saving _problems/test_pipeop_learnercv-127.R
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 1 | WARN 0 | SKIP 100 | PASS 13056 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3',
'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3',
'test_GraphLearner.R:571:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:6:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_pipeop_learnercv.R:124:3'): PipeOpLearnerCV - cv ensemble averages fold learners ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('3 string mismatches')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(as.character(result_response), task$class_names[max.col(manual_prob)]) at test_pipeop_learnercv.R:124:3
2. └─testthat::expect_true(...)
[ FAIL 1 | WARN 0 | SKIP 100 | PASS 13056 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [110s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-17 10:37:56.490099: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.490305: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.49328: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.499239: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:56.509999: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.51012: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.512401: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.518413: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:56.525143: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.525298: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.530043: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.544686: embedding
> test_pipeop_isomap.R: 2026-01-17 10:37:56.545021: DONE
> test_pipeop_isomap.R: 2026-01-17 10:37:56.550915: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.55103: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.555013: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.569449: embedding
> test_pipeop_isomap.R: 2026-01-17 10:37:56.569798: DONE
> test_pipeop_isomap.R: 2026-01-17 10:37:56.588221: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.58834: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.592679: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.626455: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:56.635428: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.63561: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.649449: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.726677: embedding
> test_pipeop_isomap.R: 2026-01-17 10:37:56.727766: DONE
> test_pipeop_isomap.R: 2026-01-17 10:37:56.759908: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.760037: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.762307: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.768411: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:56.7751: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.775259: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.780106: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.794894: embedding
> test_pipeop_isomap.R: 2026-01-17 10:37:56.795246: DONE
> test_pipeop_isomap.R: 2026-01-17 10:37:56.825241: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.825371: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.832922: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.839336: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:56.851119: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.851312: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.855849: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.870765: embedding
> test_pipeop_isomap.R: 2026-01-17 10:37:56.871124: DONE
> test_pipeop_isomap.R: 2026-01-17 10:37:56.888656: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.888778: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.891088: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.897085: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:56.908547: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.908729: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.912858: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.927641: embedding
> test_pipeop_isomap.R: 2026-01-17 10:37:56.928085: DONE
> test_pipeop_isomap.R: 2026-01-17 10:37:56.947054: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.947228: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:56.949706: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:56.95577: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:56.968843: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 10:37:56.969047: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:57.00133: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:57.016841: embedding
> test_pipeop_isomap.R: 2026-01-17 10:37:57.01736: DONE
> test_pipeop_isomap.R: 2026-01-17 10:37:57.036873: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:57.036995: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:57.039305: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:57.045489: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:57.05746: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 10:37:57.057665: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:57.062392: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:57.078025: embedding
> test_pipeop_isomap.R: 2026-01-17 10:37:57.078443: DONE
> test_pipeop_isomap.R: 2026-01-17 10:37:57.098329: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:57.098477: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:57.100745: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:57.106996: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:57.126116: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:57.126237: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:57.12881: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:57.135104: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 10:37:57.14096: Isomap START
> test_pipeop_isomap.R: 2026-01-17 10:37:57.141085: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 10:37:57.143416: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 10:37:57.149658: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [322s/418s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-16 18:25:56.804372: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:25:56.804939: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:56.831206: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:25:56.887578: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:25:56.989498: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:25:56.989801: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:57.010794: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:25:57.048616: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:25:57.109779: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 18:25:57.110218: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:57.149729: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:25:57.276389: embedding
> test_pipeop_isomap.R: 2026-01-16 18:25:57.278724: DONE
> test_pipeop_isomap.R: 2026-01-16 18:25:57.314584: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 18:25:57.331288: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:57.359271: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:25:57.467804: embedding
> test_pipeop_isomap.R: 2026-01-16 18:25:57.468873: DONE
> test_pipeop_isomap.R: 2026-01-16 18:25:57.631594: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:25:57.63204: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:57.714946: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:25:57.965164: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:25:58.052914: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 18:25:58.053333: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:58.144199: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:25:58.718672: embedding
> test_pipeop_isomap.R: 2026-01-16 18:25:58.725361: DONE
> test_pipeop_isomap.R: 2026-01-16 18:25:59.082349: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:25:59.082638: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:59.110628: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:25:59.147388: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:25:59.227513: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 18:25:59.227965: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:59.255467: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:25:59.372939: embedding
> test_pipeop_isomap.R: 2026-01-16 18:25:59.374047: DONE
> test_pipeop_isomap.R: 2026-01-16 18:25:59.693562: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:25:59.693852: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:59.730358: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:25:59.767314: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:25:59.88387: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 18:25:59.884305: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:25:59.937978: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:00.046786: embedding
> test_pipeop_isomap.R: 2026-01-16 18:26:00.087583: DONE
> test_pipeop_isomap.R: 2026-01-16 18:26:00.266122: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:26:00.266423: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:26:00.2733: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:00.324529: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:26:00.437596: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 18:26:00.438019: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:26:00.473815: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:00.58507: embedding
> test_pipeop_isomap.R: 2026-01-16 18:26:00.586355: DONE
> test_pipeop_isomap.R: 2026-01-16 18:26:00.7562: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:26:00.756499: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:26:00.786183: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:00.819669: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:26:00.920706: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 18:26:00.921151: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:26:00.946938: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:01.040499: embedding
> test_pipeop_isomap.R: 2026-01-16 18:26:01.076816: DONE
> test_pipeop_isomap.R: 2026-01-16 18:26:01.315111: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:26:01.315408: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:26:01.321868: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:01.375786: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:26:01.498687: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 18:26:01.499118: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:26:01.532604: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:01.644489: embedding
> test_pipeop_isomap.R: 2026-01-16 18:26:01.64578: DONE
> test_pipeop_isomap.R: 2026-01-16 18:26:01.820633: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:26:01.820922: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:26:01.851583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:01.911728: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:26:02.143169: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:26:02.143467: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:26:02.161647: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:02.224274: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 18:26:02.280976: Isomap START
> test_pipeop_isomap.R: 2026-01-16 18:26:02.281913: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 18:26:02.290262: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 18:26:02.343509: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [304s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-13 08:41:20.362144: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.363272: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.378263: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.399997: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:20.476046: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.476791: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.490232: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.513253: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:20.562892: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.563861: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.592648: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.648682: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:20.650832: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:20.703491: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.704282: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.728654: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.778332: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:20.780168: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:20.903257: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.903948: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.925685: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.048574: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:21.11836: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:21.119362: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:21.177825: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.417464: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:21.423429: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:21.664976: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:21.665706: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:21.677052: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.698993: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:21.753646: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:21.754913: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:21.777892: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.825633: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:21.827413: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:22.049494: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.050115: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.061357: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.086868: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:22.17783: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.179136: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.222526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.275889: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:22.277892: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:22.416591: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.417235: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.42788: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.450468: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:22.528851: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.529866: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.549407: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.594044: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:22.596101: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:22.708975: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.709602: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.71999: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.742911: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:22.812856: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.813732: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.835555: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.887232: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:22.889139: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:23.043632: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.044395: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.058142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.081035: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:23.164365: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.165408: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.191977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.241205: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:23.243225: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:23.390244: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.390759: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.400814: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.418861: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:23.546148: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.546843: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.559675: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.582483: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:23.612881: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.613325: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.623472: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.646108: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64