Last updated on 2026-07-06 02:52:53 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 4.1.0 | 10.95 | 165.06 | 176.01 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 4.1.0 | 6.84 | 147.14 | 153.98 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 4.1.0 | 17.00 | 387.47 | 404.47 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 4.1.0 | 18.00 | 520.40 | 538.40 | ERROR | |
| r-devel-windows-x86_64 | 4.1.0 | 15.00 | 347.00 | 362.00 | ERROR | |
| r-patched-linux-x86_64 | 4.1.0 | 11.10 | 195.24 | 206.34 | ERROR | |
| r-release-linux-x86_64 | 4.1.0 | 10.52 | 196.93 | 207.45 | ERROR | |
| r-release-macos-arm64 | 4.1.0 | 2.00 | 276.00 | 278.00 | OK | |
| r-release-macos-x86_64 | 4.1.0 | 7.00 | 470.00 | 477.00 | OK | |
| r-release-windows-x86_64 | 4.1.0 | 14.00 | 347.00 | 361.00 | ERROR | |
| r-oldrel-macos-arm64 | 4.1.0 | 2.00 | 281.00 | 283.00 | OK | |
| r-oldrel-macos-x86_64 | 4.1.0 | 7.00 | 460.00 | 467.00 | OK | |
| r-oldrel-windows-x86_64 | 4.1.0 | 20.00 | 398.00 | 418.00 | ERROR |
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [46s/432s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.20.0 with GnuTLS/3.8.13
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file17f0ee7d8b80a0.tar.gz locally
unpacked file17f0ee7d8b80a0.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file17f0ee641f6cc1.tar.gz locally
unpacked file17f0ee641f6cc1.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file17f0ee6794c17.tar.gz locally
unpacked file17f0ee6794c17.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file17f0ee10a409db.tar.gz locally
unpacked file17f0ee10a409db.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file17f0ee11dca628.tar.gz locally
unpacked file17f0ee11dca628.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee4f57ba4b.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee14ad92df.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee5c2a54dd.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee6e886c34.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee60942194.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee3375bd56.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee3e6b2a96.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee55cda296.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
CRAN not available, skipping base/recommended package filtering: URL 'https://lib.stat.cmu.edu/R/CRAN/src/contrib/Meta/archive.rds': Timeout of 60 seconds was reached
CRAN not available, skipping base/recommended package filtering: URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/Meta/archive.rds': Timeout of 60 seconds was reached
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file17f0ee2d59289f.tar.gz locally
unpacked file17f0ee2d59289f.tar.gz locally
unpacking file17f0ee2f65f50b.tar.gz locally
unpacked file17f0ee2f65f50b.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file17f0ee22a6122c.tar.gz locally
unpacked file17f0ee22a6122c.tar.gz locally
unpacking file17f0ee49ce6cff.tar.gz locally
unpacking file17f0ee7eb26ad1.tar.gz locally
unpacking file17f0ee68cd8421.tar.gz locally
unpacking file17f0ee3b8d4af9.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /home/hornik/tmp/scratch/RtmpNkKh7g/summary_report_mockpkg_0.1.0.html
Report will be written to: /home/hornik/tmp/scratch/RtmpNkKh7g/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee6e04c6ea/summary_report_pkgA_0.1.0.html
Output created: /home/hornik/tmp/scratch/RtmpNkKh7g/file17f0ee6e04c6ea/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 76 | PASS 1888 ]
══ Skipped tests (76) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 842.3 < 846.0
Difference: -3.7 < 0
[ FAIL 1 | WARN 0 | SKIP 76 | PASS 1888 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [40s/67s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.20.0 with OpenSSL/3.6.3
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file342a58781f9bf3.tar.gz locally
unpacked file342a58781f9bf3.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file342a587b4f3ccd.tar.gz locally
unpacked file342a587b4f3ccd.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file342a5848e93e9a.tar.gz locally
unpacked file342a5848e93e9a.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file342a5844983d85.tar.gz locally
unpacked file342a5844983d85.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file342a582cc014bc.tar.gz locally
unpacked file342a582cc014bc.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /tmp/RtmpsoOZ1d/file342a58168d3bac.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /tmp/RtmpsoOZ1d/file342a586e29332a.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /tmp/RtmpsoOZ1d/file342a586997ad03.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /tmp/RtmpsoOZ1d/file342a5825159798.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /tmp/RtmpsoOZ1d/file342a58a3f7f08.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /tmp/RtmpsoOZ1d/file342a5822afb0b0.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /tmp/RtmpsoOZ1d/file342a5811d76f23.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /tmp/RtmpsoOZ1d/file342a581f5b0b04.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file342a586d29ca54.tar.gz locally
unpacked file342a586d29ca54.tar.gz locally
unpacking file342a5851f0cdb0.tar.gz locally
unpacked file342a5851f0cdb0.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file342a5829789894.tar.gz locally
unpacked file342a5829789894.tar.gz locally
unpacking file342a58396d0777.tar.gz locally
unpacking file342a5820f9b076.tar.gz locally
unpacking file342a584e264984.tar.gz locally
unpacking file342a5847b9e97.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /tmp/RtmpsoOZ1d/summary_report_mockpkg_0.1.0.html
Report will be written to: /tmp/RtmpsoOZ1d/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /tmp/RtmpsoOZ1d/file342a5865008bf1/summary_report_pkgA_0.1.0.html
Output created: /tmp/RtmpsoOZ1d/file342a5865008bf1/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 842.3 < 846.0
Difference: -3.7 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [73s/214s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.11.1 with OpenSSL/3.2.6
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking filee64ac2caa5e2a.tar.gz locally
unpacked filee64ac2caa5e2a.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filee64ac66028c17.tar.gz locally
unpacked filee64ac66028c17.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filee64ac11cc71e9.tar.gz locally
unpacked filee64ac11cc71e9.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking filee64ac1f83f561.tar.gz locally
unpacked filee64ac1f83f561.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking filee64ac142d21f0.tar.gz locally
unpacked filee64ac142d21f0.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/gtar: Child returned status 1
/usr/bin/gtar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac24a89ba2.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac47b44d61.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac46bf05c4.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac77a74ee2.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64acde08fa2.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac7dbec5e7.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac23829d04.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac25527fce.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking filee64ac20791032.tar.gz locally
unpacked filee64ac20791032.tar.gz locally
unpacking filee64ac781c46ef.tar.gz locally
unpacked filee64ac781c46ef.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking filee64ac4ccb2dfa.tar.gz locally
unpacked filee64ac4ccb2dfa.tar.gz locally
unpacking filee64acc316f02.tar.gz locally
unpacking filee64ac2428cb49.tar.gz locally
unpacking filee64ac427efd12.tar.gz locally
unpacking filee64ac466a3d0a.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/summary_report_mockpkg_0.1.0.html
Report will be written to: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac5b696fbf/summary_report_pkgA_0.1.0.html
Output created: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac5b696fbf/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /data/gannet/ripley/R/packages/tests-clang/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.11.1 with OpenSSL/3.2.6
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file1a84125c42ba58.tar.gz locally
unpacked file1a84125c42ba58.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file1a84124c38d32f.tar.gz locally
unpacked file1a84124c38d32f.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file1a84121e051d1.tar.gz locally
unpacked file1a84121e051d1.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file1a84124ec44a6b.tar.gz locally
unpacked file1a84124ec44a6b.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file1a841220923aad.tar.gz locally
unpacked file1a841220923aad.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/gtar: Child returned status 1
/usr/bin/gtar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a8412183ede2d.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a841253fbe23.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84124ba16c5c.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a8412516297bc.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84122e2ce732.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84121f1f93c.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a841259effbf9.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a8412435faf57.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file1a84121a17b3d.tar.gz locally
unpacked file1a84121a17b3d.tar.gz locally
unpacking file1a841250a729d6.tar.gz locally
unpacked file1a841250a729d6.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file1a84122088cb61.tar.gz locally
unpacked file1a84122088cb61.tar.gz locally
unpacking file1a841239e55a3c.tar.gz locally
unpacking file1a84121dd653a.tar.gz locally
unpacking file1a84123932133f.tar.gz locally
unpacking file1a84122018735d.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/summary_report_mockpkg_0.1.0.html
Report will be written to: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84122a3f03f/summary_report_pkgA_0.1.0.html
Output created: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84122a3f03f/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /data/gannet/ripley/R/packages/tests-devel/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 4.1.0
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘test.package.0005’ ‘test.package.0006’ ‘test.package.0009’
‘test.package.0010’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 4.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [78s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.14.1 with Schannel
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking filecf8463056311.tar.gz locally
unpacked filecf8463056311.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filecf84190f3617.tar.gz locally
unpacked filecf84190f3617.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filecf8415f020f2.tar.gz locally
unpacked filecf8415f020f2.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking filecf8431834969.tar.gz locally
unpacked filecf8431834969.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking filecf8430a32fb6.tar.gz locally
unpacked filecf8430a32fb6.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
/usr/bin/tar: Removing leading `D:' from member names
/usr/bin/tar: D\:\temp\2026_07_03_01_50_00_1784\\RtmpYloOb1/old_structure: Cannot stat: No such file or directory
/usr/bin/tar: Exiting with failure status due to previous errors
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: D:\temp\2026_07_03_01_50_00_1784\RtmpYloOb1\filecf8418092409.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: D:\temp\2026_07_03_01_50_00_1784\RtmpYloOb1\filecf84100d4c74.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: D:\temp\2026_07_03_01_50_00_1784\RtmpYloOb1\filecf847ced2f39.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: D:\temp\2026_07_03_01_50_00_1784\RtmpYloOb1\filecf844faa1680.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: D:\temp\2026_07_03_01_50_00_1784\RtmpYloOb1\filecf8440797abb.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: D:\temp\2026_07_03_01_50_00_1784\RtmpYloOb1\filecf848f56c5f.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: D:\temp\2026_07_03_01_50_00_1784\RtmpYloOb1\filecf841fae739a.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: D:\temp\2026_07_03_01_50_00_1784\RtmpYloOb1\filecf8411f85ef7.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking filecf8445331c8f.tar.gz locally
unpacked filecf8445331c8f.tar.gz locally
unpacking filecf841b46588e.tar.gz locally
unpacked filecf841b46588e.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking filecf8446ee5162.tar.gz locally
unpacked filecf8446ee5162.tar.gz locally
unpacking filecf849d2201c.tar.gz locally
unpacking filecf8471466857.tar.gz locally
unpacking filecf8426e11f2d.tar.gz locally
unpacking filecf84588855c4.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: D:/temp/2026_07_03_01_50_00_1784/RtmpYloOb1/summary_report_mockpkg_0.1.0.html
Report will be written to: D:/temp/2026_07_03_01_50_00_1784/RtmpYloOb1/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: D:/temp/2026_07_03_01_50_00_1784/RtmpYloOb1/filecf845c7b2490/summary_report_pkgA_0.1.0.html
Output created: D:/temp/2026_07_03_01_50_00_1784/RtmpYloOb1/filecf845c7b2490/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to d:/Rcompile/CRANpkg/local/4.7/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 842.3 < 846.0
Difference: -3.7 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [52s/81s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.20.0 with GnuTLS/3.8.13
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file3ea46a76f171db.tar.gz locally
unpacked file3ea46a76f171db.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file3ea46a720dbd15.tar.gz locally
unpacked file3ea46a720dbd15.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file3ea46a1504f288.tar.gz locally
unpacked file3ea46a1504f288.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file3ea46a449b6abf.tar.gz locally
unpacked file3ea46a449b6abf.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file3ea46a16d7429f.tar.gz locally
unpacked file3ea46a16d7429f.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a6506eec3.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a63b9fd63.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a1a629c8e.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a3fcaa2eb.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a779e889f.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a31e8bbfb.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a6da97001.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a5fa19de6.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file3ea46a67397a02.tar.gz locally
unpacked file3ea46a67397a02.tar.gz locally
unpacking file3ea46a6938e094.tar.gz locally
unpacked file3ea46a6938e094.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file3ea46a54cf1fad.tar.gz locally
unpacked file3ea46a54cf1fad.tar.gz locally
unpacking file3ea46a449c68ba.tar.gz locally
unpacking file3ea46a21aa0dea.tar.gz locally
unpacking file3ea46a6bd6f1fe.tar.gz locally
unpacking file3ea46a68673ea2.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /home/hornik/tmp/scratch/RtmpUZ2L9V/summary_report_mockpkg_0.1.0.html
Report will be written to: /home/hornik/tmp/scratch/RtmpUZ2L9V/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a26eb2352/summary_report_pkgA_0.1.0.html
Output created: /home/hornik/tmp/scratch/RtmpUZ2L9V/file3ea46a26eb2352/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [51s/91s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.20.0 with GnuTLS/3.8.13
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file2269025cc8e052.tar.gz locally
unpacked file2269025cc8e052.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file2269024a7ea849.tar.gz locally
unpacked file2269024a7ea849.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file22690267db4aa7.tar.gz locally
unpacked file22690267db4aa7.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file22690221b7b034.tar.gz locally
unpacked file22690221b7b034.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file226902f5a2f15.tar.gz locally
unpacked file226902f5a2f15.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpOforBB/file2269023eb28d2.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpOforBB/file22690225c69c09.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpOforBB/file226902f8c982.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpOforBB/file22690214358ce2.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpOforBB/file2269024952c7c1.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpOforBB/file2269024c935fd4.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpOforBB/file22690213c79195.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpOforBB/file2269022aa12e18.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file22690267767abf.tar.gz locally
unpacked file22690267767abf.tar.gz locally
unpacking file22690251a28f61.tar.gz locally
unpacked file22690251a28f61.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file2269021d26fb6.tar.gz locally
unpacked file2269021d26fb6.tar.gz locally
unpacking file22690254ef2aa8.tar.gz locally
unpacking file22690219bbffb1.tar.gz locally
unpacking file226902330f69bc.tar.gz locally
unpacking file2269027ee74ba5.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /home/hornik/tmp/scratch/RtmpOforBB/summary_report_mockpkg_0.1.0.html
Report will be written to: /home/hornik/tmp/scratch/RtmpOforBB/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /home/hornik/tmp/scratch/RtmpOforBB/file2269026c004590/summary_report_pkgA_0.1.0.html
Output created: /home/hornik/tmp/scratch/RtmpOforBB/file2269026c004590/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 842.3 < 846.0
Difference: -3.7 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 4.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [79s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.14.1 with Schannel
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file1145c587a21bd.tar.gz locally
unpacked file1145c587a21bd.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file1145c695620a5.tar.gz locally
unpacked file1145c695620a5.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file1145c3aa376f7.tar.gz locally
unpacked file1145c3aa376f7.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file1145c2712295.tar.gz locally
unpacked file1145c2712295.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file1145c26bb38f1.tar.gz locally
unpacked file1145c26bb38f1.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
/usr/bin/tar: Removing leading `D:' from member names
/usr/bin/tar: D\:\temp\2026_07_04_01_50_00_21786\\RtmpeSsbrz/old_structure: Cannot stat: No such file or directory
/usr/bin/tar: Exiting with failure status due to previous errors
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpeSsbrz\file1145c67a53a92.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpeSsbrz\file1145c4cc96df4.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpeSsbrz\file1145c14461d87.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpeSsbrz\file1145c7403e45.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpeSsbrz\file1145c39f5c5a.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpeSsbrz\file1145c19705eba.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpeSsbrz\file1145c42ff26a2.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpeSsbrz\file1145c3daa535d.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file1145c5bd44673.tar.gz locally
unpacked file1145c5bd44673.tar.gz locally
unpacking file1145c12ea3fff.tar.gz locally
unpacked file1145c12ea3fff.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file1145c4793794e.tar.gz locally
unpacked file1145c4793794e.tar.gz locally
unpacking file1145c502c338e.tar.gz locally
unpacking file1145c2f5b3747.tar.gz locally
unpacking file1145c6e597792.tar.gz locally
unpacking file1145c64a04a21.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: D:/temp/2026_07_04_01_50_00_21786/RtmpeSsbrz/summary_report_mockpkg_0.1.0.html
Report will be written to: D:/temp/2026_07_04_01_50_00_21786/RtmpeSsbrz/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: D:/temp/2026_07_04_01_50_00_21786/RtmpeSsbrz/file1145c7b4c5252/summary_report_pkgA_0.1.0.html
Output created: D:/temp/2026_07_04_01_50_00_21786/RtmpeSsbrz/file1145c7b4c5252/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to d:/Rcompile/CRANpkg/local/4.6/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 842.3 < 846.0
Difference: -3.7 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 4.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [92s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.14.1 with Schannel
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file500c6df26d2.tar.gz locally
unpacked file500c6df26d2.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file500c74aa3e56.tar.gz locally
unpacked file500c74aa3e56.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file500c5ad87689.tar.gz locally
unpacked file500c5ad87689.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file500c405f2d69.tar.gz locally
unpacked file500c405f2d69.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file500c1b09a97.tar.gz locally
unpacked file500c1b09a97.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
/usr/bin/tar: Removing leading `D:' from member names
/usr/bin/tar: D\:\temp\2026_07_04_01_50_00_21786\\RtmpQTJQiu/old_structure: Cannot stat: No such file or directory
/usr/bin/tar: Exiting with failure status due to previous errors
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpQTJQiu\file500c1003b58.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpQTJQiu\file500c150331ce.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpQTJQiu\file500c21ca6988.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpQTJQiu\file500c3b03a8d.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpQTJQiu\file500c26946f3.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpQTJQiu\file500cb9f3532.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpQTJQiu\file500c176c3e3b.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: D:\temp\2026_07_04_01_50_00_21786\RtmpQTJQiu\file500cfa81442.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file500c5644269c.tar.gz locally
unpacked file500c5644269c.tar.gz locally
unpacking file500c47d73ae.tar.gz locally
unpacked file500c47d73ae.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file500c501b4101.tar.gz locally
unpacked file500c501b4101.tar.gz locally
unpacking file500c3ce33eb7.tar.gz locally
unpacking file500c28df4594.tar.gz locally
unpacking file500c300fe1.tar.gz locally
unpacking file500c19c178c4.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: D:/temp/2026_07_04_01_50_00_21786/RtmpQTJQiu/summary_report_mockpkg_0.1.0.html
Report will be written to: D:/temp/2026_07_04_01_50_00_21786/RtmpQTJQiu/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: D:/temp/2026_07_04_01_50_00_21786/RtmpQTJQiu/file500c7db047a1/summary_report_pkgA_0.1.0.html
Output created: D:/temp/2026_07_04_01_50_00_21786/RtmpQTJQiu/file500c7db047a1/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to d:/Rcompile/CRANpkg/local/4.5/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 842.3 < 846.0
Difference: -3.7 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64