Last updated on 2025-10-17 02:51:11 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/125s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.612, system: 0.068, elapsed: 2.409 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.977, system: 0.144, elapsed: 10.927 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.014, elapsed: 0.220 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.730, system: 0.205, elapsed: 4.471 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.007, elapsed: 0.252 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.196, system: 0.460, elapsed: 18.897 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.584, system: 0.061, elapsed: 2.446 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.278, system: 0.243, elapsed: 14.502 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.015, elapsed: 0.312 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.923, system: 0.257, elapsed: 6.308 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.006, elapsed: 0.261 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.683, system: 0.614, elapsed: 24.694 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.669, system: 0.060, elapsed: 2.654 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.253, system: 0.222, elapsed: 13.765 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.015, elapsed: 0.332 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.861, system: 0.238, elapsed: 6.699 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.004, elapsed: 0.257 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.122, system: 0.203, elapsed: 1.124 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.879, system: 0.772, elapsed: 25.916 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.519, system: 0.034, elapsed: 2.298 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.197, system: 0.233, elapsed: 14.052 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.020, elapsed: 0.442 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.066, system: 0.338, elapsed: 7.552 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.013, elapsed: 0.371 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.508, system: 0.641, elapsed: 22.321 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.305, system: 1.312, elapsed: 48.174 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/110s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.515, system: 0.049, elapsed: 1.735 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.729, system: 0.094, elapsed: 9.485 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.013, elapsed: 0.202 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.655, system: 0.239, elapsed: 5.430 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.013, elapsed: 0.261 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.789, system: 0.437, elapsed: 17.762 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.649, system: 0.067, elapsed: 2.669 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.125, system: 0.239, elapsed: 14.033 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.016, elapsed: 0.322 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.828, system: 0.249, elapsed: 5.693 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.010, elapsed: 0.339 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.510, system: 0.631, elapsed: 23.878 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.677, system: 0.071, elapsed: 2.435 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.213, system: 0.278, elapsed: 14.299 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.014, elapsed: 0.262 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.599, system: 0.191, elapsed: 5.309 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.012, elapsed: 0.441 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.008, system: 0.229, elapsed: 1.044 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.476, system: 0.833, elapsed: 24.705 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.539, system: 0.056, elapsed: 1.980 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.052, system: 0.269, elapsed: 11.140 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.016, elapsed: 0.277 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.837, system: 0.304, elapsed: 6.312 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.007, elapsed: 0.288 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.009, system: 0.510, elapsed: 15.006 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.397, system: 1.197, elapsed: 35.901 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64