Last updated on 2026-02-10 01:50:55 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.953, system: 0.166, elapsed: 6.104 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.687, system: 0.715, elapsed: 31.471 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.233, system: 0.038, elapsed: 1.428 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.008, system: 1.769, elapsed: 179.913 seconds]
Computing values for grid cells...
... done. [user: 0.193, system: 0.018, elapsed: 0.646 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.799, system: 3.284, elapsed: 223.469 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.604, system: 0.071, elapsed: 5.310 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.028, system: 0.265, elapsed: 31.608 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.031, elapsed: 1.243 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.590, system: 1.800, elapsed: 181.191 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.011, elapsed: 0.870 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.341, system: 2.571, elapsed: 223.304 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.614, system: 0.070, elapsed: 5.416 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.032, system: 0.247, elapsed: 34.983 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.332, system: 0.044, elapsed: 1.821 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.218, system: 2.287, elapsed: 161.211 seconds]
Computing values for grid cells...
... done. [user: 0.200, system: 0.021, elapsed: 0.323 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.362, system: 0.480, elapsed: 2.611 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.632, system: 3.751, elapsed: 210.683 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.632, system: 0.071, elapsed: 4.064 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.060, system: 0.204, elapsed: 23.542 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.029, elapsed: 1.182 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.942, system: 1.733, elapsed: 102.173 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.016, elapsed: 0.287 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 15.327, system: 1.439, elapsed: 29.981 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 36.243, system: 3.981, elapsed: 164.039 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2m/15m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.685, system: 0.070, elapsed: 5.819 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.865, system: 0.178, elapsed: 26.824 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.027, elapsed: 1.243 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.466, system: 1.655, elapsed: 178.768 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.009, elapsed: 0.560 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.043, system: 2.104, elapsed: 215.508 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.590, system: 0.047, elapsed: 4.905 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.687, system: 0.126, elapsed: 25.697 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.022, elapsed: 1.147 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.156, system: 1.196, elapsed: 148.668 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.015, elapsed: 0.440 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.465, system: 1.583, elapsed: 182.694 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.839, system: 0.094, elapsed: 5.042 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.804, system: 0.172, elapsed: 21.132 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.233, system: 0.034, elapsed: 1.139 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.712, system: 2.284, elapsed: 166.586 seconds]
Computing values for grid cells...
... done. [user: 0.193, system: 0.021, elapsed: 0.483 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.251, system: 0.400, elapsed: 1.627 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.818, system: 3.335, elapsed: 198.331 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.866, system: 0.098, elapsed: 5.952 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.236, system: 0.364, elapsed: 37.228 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.228, system: 0.037, elapsed: 1.341 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.743, system: 2.387, elapsed: 171.281 seconds]
Computing values for grid cells...
... done. [user: 0.196, system: 0.020, elapsed: 0.873 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.444, system: 1.384, elapsed: 66.558 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 33.573, system: 4.842, elapsed: 287.895 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64