Last updated on 2025-09-15 01:49:13 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/98s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.510, system: 0.053, elapsed: 2.142 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.871, system: 0.110, elapsed: 11.384 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.014, elapsed: 0.247 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.324, system: 0.171, elapsed: 3.805 seconds]
Computing values for grid cells...
... done. [user: 0.148, system: 0.002, elapsed: 0.150 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.575, system: 0.376, elapsed: 18.456 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.296, system: 0.023, elapsed: 1.438 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.638, system: 0.128, elapsed: 11.199 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.015, elapsed: 0.295 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.816, system: 0.227, elapsed: 5.283 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.004, elapsed: 0.178 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.598, system: 0.420, elapsed: 19.595 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.588, system: 0.048, elapsed: 2.280 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.095, system: 0.177, elapsed: 12.456 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.013, elapsed: 0.236 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.734, system: 0.215, elapsed: 5.393 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.006, elapsed: 0.206 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.124, system: 0.216, elapsed: 0.943 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.496, system: 0.708, elapsed: 22.417 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.489, system: 0.030, elapsed: 1.718 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.260, system: 0.114, elapsed: 8.850 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.020, elapsed: 0.269 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.783, system: 0.255, elapsed: 4.498 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.004, elapsed: 0.165 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.415, system: 0.752, elapsed: 14.539 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 24.914, system: 1.213, elapsed: 30.776 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/117s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.482, system: 0.039, elapsed: 2.244 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.007, system: 0.066, elapsed: 15.130 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.013, elapsed: 0.322 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.644, system: 0.186, elapsed: 7.065 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.302 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.016, system: 0.326, elapsed: 25.960 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.516, system: 0.031, elapsed: 2.694 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.845, system: 0.063, elapsed: 13.702 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.013, elapsed: 0.308 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.550, system: 0.158, elapsed: 5.799 seconds]
Computing values for grid cells...
... done. [user: 0.157, system: 0.002, elapsed: 0.160 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.776, system: 0.290, elapsed: 23.515 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.485, system: 0.035, elapsed: 1.935 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.817, system: 0.103, elapsed: 12.553 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.012, elapsed: 0.311 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.550, system: 0.177, elapsed: 5.689 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.016, elapsed: 0.299 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.079, system: 0.260, elapsed: 1.032 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.925, system: 0.641, elapsed: 22.767 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.522, system: 0.035, elapsed: 2.449 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.951, system: 0.069, elapsed: 12.457 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.179, system: 0.011, elapsed: 0.267 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.575, system: 0.166, elapsed: 5.431 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.228 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.136, system: 0.513, elapsed: 15.433 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.175, system: 0.823, elapsed: 37.232 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64