AlphaPart: Partition/Decomposition of Breeding Values by Paths of Information

A software that implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes. The partitioning method is described in Garcia-Cortes et al. (2008) <doi:10.1017/S175173110800205X>. The package includes the main function AlphaPart for partitioning breeding values and auxiliary functions for manipulating data and summarizing, visualizing, and saving results.

Version:	0.9.8
Depends:	R (≥ 3.5.0)
Imports:	directlabels (≥ 1.1), ggplot2 (≥ 0.8.9), pedigree (≥ 1.3.1), Rcpp (≥ 0.9.4), methods (≥ 3.6.2), reshape, dplyr, magrittr, tibble (≥ 3.1.7)
LinkingTo:	Rcpp
Suggests:	RColorBrewer (≥ 1.0-2), truncnorm (≥ 1.0-5), knitr, rmarkdown, testthat (≥ 3.0.0), covr, ggridges (≥ 0.5.3)
Published:	2022-11-15
DOI:	10.32614/CRAN.package.AlphaPart
Author:	Gregor Gorjanc [aut, cre], Jana Obsteter [aut], Thiago de Paula Oliveira [aut]
Maintainer:	Gregor Gorjanc <highlander.research.lab at gmail.com>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	yes
CRAN checks:	AlphaPart results

Documentation:

Reference manual:	AlphaPart.html , AlphaPart.pdf
Vignettes:	PartitioningVariance (source, R code) AlphaPart (source, R code)

Downloads:

Package source:	AlphaPart_0.9.8.tar.gz
Windows binaries:	r-devel: AlphaPart_0.9.8.zip, r-release: AlphaPart_0.9.8.zip, r-oldrel: AlphaPart_0.9.8.zip
macOS binaries:	r-release (arm64): AlphaPart_0.9.8.tgz, r-oldrel (arm64): AlphaPart_0.9.8.tgz, r-release (x86_64): AlphaPart_0.9.8.tgz, r-oldrel (x86_64): AlphaPart_0.9.8.tgz
Old sources:	AlphaPart archive

Linking:

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