opentimsr: An Open-Source Loader for Bruker's timsTOF Data Files
Reads raw data from Bruker's timsTOF mass spectrometers, stored in analysis.tdf and analysis.tdf_bin files inside .d folders. Frames can be selected by number or by retention time, and each peak is reported with its scan, time-of-flight index, intensity, mass-to-charge ratio and inverse ion mobility. Mass-to-charge ratios and ion mobilities are computed with built-in open-source calibration, or optionally with Bruker's proprietary library. See Łącki et al. (2021) <doi:10.1021/acs.jproteome.0c00962>.
| Version: | 1.2.0 |
| Depends: | R (≥ 4.3.0) |
| Imports: | Rcpp (≥ 0.12.0), methods, DBI, RSQLite |
| LinkingTo: | Rcpp |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2026-10-22 |
| DOI: | 10.32614/CRAN.package.opentimsr (may not be active yet) |
| Author: | Michał Piotr Startek
 [aut, cph],
Mateusz Krzysztof Łącki
[aut, cre,
cph],
mandreyel [ctb, cph] (Author and copyright holder of the bundled 'mio'
library (https://github.com/mandreyel/mio)) |
| Maintainer: | Mateusz Krzysztof Łącki <matteo.lacki at gmail.com> |
| BugReports: | https://github.com/michalsta/opentims/issues |
| License: | MIT + file LICENSE |
| Copyright: | See file inst/COPYRIGHTS opentimsr copyright details |
| URL: | https://github.com/michalsta/opentims |
| NeedsCompilation: | yes |
| SystemRequirements: | C++20, libzstd |
| Citation: | opentimsr citation info |
| CRAN checks: | opentimsr results [issues need fixing before 2026-11-12] |
Documentation:
| Reference manual: | opentimsr.html , opentimsr.pdf |
Downloads:
| Package source: | opentimsr_1.2.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): opentimsr_1.2.0.tgz, r-oldrel (arm64): opentimsr_1.2.0.tgz, r-release (x86_64): opentimsr_1.2.0.tgz, r-oldrel (x86_64): opentimsr_1.2.0.tgz |
Linking:
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