Last updated on 2025-09-28 01:50:33 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [88s/210s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.612, system: 0.184, elapsed: 4.980 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.350, system: 0.254, elapsed: 23.574 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.031, elapsed: 0.582 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.104, system: 0.357, elapsed: 11.289 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.008, elapsed: 0.432 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.084, system: 1.129, elapsed: 42.966 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.499, system: 0.055, elapsed: 3.267 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.377, system: 0.348, elapsed: 24.282 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.031, elapsed: 0.486 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.890, system: 0.313, elapsed: 9.527 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.013, elapsed: 0.413 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.777, system: 1.044, elapsed: 39.929 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.677, system: 0.093, elapsed: 4.557 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.266, system: 0.233, elapsed: 24.264 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.031, elapsed: 0.568 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.013, system: 0.361, elapsed: 9.680 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.010, elapsed: 0.459 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.278, system: 0.355, elapsed: 2.611 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.328, system: 1.385, elapsed: 44.379 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.657, system: 0.109, elapsed: 4.648 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.394, system: 0.300, elapsed: 22.910 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.035, elapsed: 0.540 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.163, system: 0.411, elapsed: 11.039 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.009, elapsed: 0.315 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.030, system: 1.135, elapsed: 29.033 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.403, system: 2.311, elapsed: 71.064 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/224s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.869, system: 0.154, elapsed: 4.377 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.618, system: 0.525, elapsed: 20.277 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.042, elapsed: 0.733 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.099, system: 0.470, elapsed: 9.425 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.017, elapsed: 0.611 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.653, system: 1.528, elapsed: 37.817 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.850, system: 0.133, elapsed: 5.076 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.331, system: 0.355, elapsed: 21.608 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.029, elapsed: 0.597 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.034, system: 0.413, elapsed: 14.410 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.014, elapsed: 0.359 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.194, system: 1.005, elapsed: 43.815 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.663, system: 0.105, elapsed: 3.487 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.422, system: 0.422, elapsed: 25.415 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.043, elapsed: 0.613 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.947, system: 0.387, elapsed: 11.253 seconds]
Computing values for grid cells...
... done. [user: 0.191, system: 0.040, elapsed: 0.905 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.154, system: 0.376, elapsed: 3.575 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.321, system: 1.757, elapsed: 48.166 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.648, system: 0.086, elapsed: 6.656 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.379, system: 0.440, elapsed: 22.480 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.029, elapsed: 0.646 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.851, system: 0.344, elapsed: 12.547 seconds]
Computing values for grid cells...
... done. [user: 0.193, system: 0.013, elapsed: 0.533 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.794, system: 1.007, elapsed: 32.797 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.844, system: 2.241, elapsed: 78.883 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64