CRAN Package Check Results for Maintainer ‘Nicolas Descostes <nicolas.descostes at gmail.com>’

Last updated on 2026-04-28 02:51:18 CEST.

Package	ERROR	OK
tepr	1	12

Package tepr

Current CRAN status: ERROR: 1, OK: 12

Version: 1.1.15
Check: examples
Result: ERROR Running examples in 'tepr-Ex.R' failed The error most likely occurred in: > ### Name: retrievechrom > ### Title: Retrieve chromosome lengths and information for a specified > ### genome. > ### Aliases: retrievechrom > > ### ** Examples > > # This example requires an internet connection to the UCSC database > hg19_chroms <- retrievechrom(genomename = "hg19", verbose = TRUE) Retrieving chromosome lengths Error in retrievechrom(genomename = "hg19", verbose = TRUE) : [tepr] Error: Genome not found. 'hg19' not found via SeqinfoForUCSCGenome. Check spelling or UCSC availability. Alternatively, provide 'chromtab' directly. Execution halted Flavor: r-oldrel-windows-x86_64

Version: 1.1.15
Check: tests
Result: ERROR Running 'testthat.R' [30s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(tepr) > > test_check("tepr") Saving _problems/test-preprocessing-blacklisthighmap-10.R Saving _problems/test-preprocessing-createtablescores-11.R Saving _problems/test-preprocessing-24.R [ FAIL 3 | WARN 0 | SKIP 0 | PASS 28 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-preprocessing-blacklisthighmap.R:10:1'): (code run outside of `test_that()`) ── Error in `retrievechrom(genomename, verbose = FALSE, filterchrom = FALSE)`: [tepr] Error: Genome not found. 'hg38' not found via SeqinfoForUCSCGenome. Check spelling or UCSC availability. Alternatively, provide 'chromtab' directly. Backtrace: ▆ 1. └─tepr::retrievechrom(genomename, verbose = FALSE, filterchrom = FALSE) at test-preprocessing-blacklisthighmap.R:10:1 ── Error ('test-preprocessing-createtablescores.R:11:1'): (code run outside of `test_that()`) ── Error in `retrievechrom(genomename, verbose = FALSE)`: [tepr] Error: Genome not found. 'hg38' not found via SeqinfoForUCSCGenome. Check spelling or UCSC availability. Alternatively, provide 'chromtab' directly. Backtrace: ▆ 1. └─tepr::retrievechrom(genomename, verbose = FALSE) at test-preprocessing-createtablescores.R:11:1 ── Error ('test-preprocessing.R:23:1'): (code run outside of `test_that()`) ──── Error in `retrievechrom(genomename, verbose)`: [tepr] Error: Genome not found. 'hg38' not found via SeqinfoForUCSCGenome. Check spelling or UCSC availability. Alternatively, provide 'chromtab' directly. Backtrace: ▆ 1. └─tepr::preprocessing(...) at test-preprocessing.R:23:1 2. └─tepr:::.createbedgraphlistwmean(...) 3. └─tepr::blacklisthighmap(...) 4. └─tepr::retrievechrom(genomename, verbose) [ FAIL 3 | WARN 0 | SKIP 0 | PASS 28 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64