Last updated on 2026-06-07 02:50:58 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ABCoptim | 13 | ||
| aphylo | 13 | ||
| barry | 13 | ||
| defm | 13 | ||
| epiworldR | 13 | ||
| ergmito | 13 | ||
| fmcmc | 2 | 11 | |
| googlePublicData | 2 | 11 | |
| measles | 1 | 12 | |
| netdiffuseR | 13 | ||
| netplot | 1 | 12 | |
| slurmR | 1 | 1 | 11 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.5-2
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (JOSS reviewer, <https://orcid.org/0000-0001-8172-3603>)’
Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-8172-3603>)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 0.16.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘George Vega Yon <g.vegayon@gmail.com>’
Found the following (possibly) invalid file URI:
URI: publicdata.google.com
From: man/dspl.Rd
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [3s/2s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if (requireNamespace("tinytest", quietly = TRUE)) {
+
+ test_tmat_matches_expected <- function(tmat) {
+ # Check for out of bounds values
+ tinytest::expect_false(any(tmat < 0))
+ tinytest::expect_false(any(tmat > 1))
+ }
+
+ tinytest::test_package("measles")
+ }
Loading required package: epiworldR
Thank you for using epiworldR! Please consider citing it in your work.
You can find the citation information by running
citation("epiworldR")
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 1 tests OK
test-contact-matrix.R......... 1 tests OK _________________________________________________________________________
|||||||Running the model...
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
|||||||
test-contact-matrix.R......... 1 tests OK
test-contact-matrix.R......... 1 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 4 tests OK
test-contact-matrix.R......... 4 tests OK _________________________________________________________________________
|||||||Running the model...
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
|||||||
test-contact-matrix.R......... 4 tests OK
test-contact-matrix.R......... 4 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 6 tests OK
test-contact-matrix.R......... 7 tests OK
test-contact-matrix.R......... 8 tests OK 88ms
test-hospitalization.R........ 0 tests
test-hospitalization.R........ 0 tests
test-hospitalization.R........ 0 tests
test-hospitalization.R........ 0 tests
test-hospitalization.R........ 0 tests Starting multiple runs (1000) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||terminate called after throwing an instance of 'std::runtime_error'
what(): Could not open file "/tmp/RtmpRq1OGj/epiworldR-11c0fb7c2701bf/00858-episim_transmission.csv" for writing.
Aborted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘short-creek.qmd’ using html
<1b>[31m
processing file: short-creek.qmd
<1b>[39m<1b>[31mterminate called after throwing an instance of '<1b>[39m<1b>[31mstd::runtime_error'
what(): Could not open file "/tmp/RtmphSfhIW/epiworldR-11cfc569954a14/00072-episim_outbreak_size.csv" for writing.
<1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Error: processing vignette 'short-creek.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: short-creek.qmd
<1b>[31mterminate called after throwing an instance of 'std::runtime_error'<1b>[39m
what(): Could not open file
"/tmp/RtmphSfhIW/epiworldR-11cfc569954a14/00072-episim_outbreak_size.csv" for
writing.
<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘short-creek.qmd’
SUMMARY: processing the following file failed:
‘short-creek.qmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 1, OK: 12
Version: 0.3-0
Check: for unstated dependencies in vignettes
Result: NOTE
Warning in gzfile(file, mode) :
cannot open compressed file '/tmp/Rtmpf9DdVQ/runri2269bd500df2db', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 0.5-4
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (JOSS reviewer, <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (JOSS reviewer, <https://orcid.org/0000-0001-9754-0393>)’
Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-9754-0393>)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.5-4
Check: tests
Result: ERROR
Running ‘tinytest.R’ [1s/1s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> Sys.setenv(R_TESTS = "")
> if ( requireNamespace("tinytest", quietly=TRUE) & (.Platform$OS.type == "unix") ) {
+
+ library(slurmR)
+
+ # Figuringout the directory
+ SLURMR_TEST_DIR <- Sys.getenv("SLURMR_TEST_DIR")
+ if (SLURMR_TEST_DIR == "")
+ SLURMR_TEST_DIR <- NULL
+
+
+ if (slurm_available()) {
+ opts_slurmR$set_tmp_path(SLURMR_TEST_DIR)
+ # opts_slurmR$set_opts(account = "pdthomas_136")
+ } else {
+ opts_slurmR$set_tmp_path(tempdir())
+ }
+ tinytest::test_package("slurmR")
+ }
Loading required package: parallel
slurmR default option for `tmp_path` (used to store auxiliar files) set to:
/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/slurmR.Rcheck/tests
You can change this and checkout other slurmR options using: ?opts_slurmR, or you could just type "opts_slurmR" on the terminal.
test-Slurm_Map.R.............. 0 tests
test-Slurm_Map.R.............. 0 tests
test-Slurm_Map.R.............. 0 tests
test-Slurm_Map.R.............. 0 tests
test-Slurm_Map.R.............. 0 tests
test-Slurm_Map.R.............. 1 tests OK
test-Slurm_Map.R.............. 1 tests OK
test-Slurm_Map.R.............. 1 tests OK
test-Slurm_Map.R.............. 1 tests OK Error: An error has occurred when calling
system2(opts_slurmR$get_cmd(), option, stdout = TRUE, stderr = TRUE)
Return code (status): 1
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc