Last updated on 2025-12-19 02:50:27 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 3 | 10 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1]
> test_multiplicities.R: 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-17 05:50:27.688288: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.688546: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:27.692067: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:27.698472: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:27.709814: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.709949: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:27.712255: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:27.718254: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:27.72473: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.724916: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:27.737902: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:27.753103: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:27.753627: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:27.760424: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.760558: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:27.76481: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:27.779837: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:27.780276: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:27.800288: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.800434: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.009506: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.044414: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.052477: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.052678: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.061455: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.139735: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.140837: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.16967: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.169786: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.172129: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.178093: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.184565: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.184732: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.189161: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.204652: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.205061: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.235121: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.235276: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.237713: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.243896: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.254611: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.254794: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.259445: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.274459: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.274847: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.293697: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.293855: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.301592: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.307623: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.318237: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.31841: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.323046: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.338695: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.339127: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.355895: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.35603: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.358403: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.365068: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.374334: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.374479: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.378443: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.391406: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.391675: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.405026: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.405126: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.40717: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.412407: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.42051: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.420638: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.424436: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.438548: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.439176: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.459115: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.459246: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.461657: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.468012: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.48637: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.486524: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.493017: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.498242: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.502284: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.502364: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.504179: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.509547: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [301s/263s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-18 19:01:12.883247: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:12.883812: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:12.898165: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:12.922822: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:12.988813: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:12.989115: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:13.002587: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:13.030137: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:13.062499: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 19:01:13.062956: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:13.085322: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:13.151213: embedding
> test_pipeop_isomap.R: 2025-12-18 19:01:13.152346: DONE
> test_pipeop_isomap.R: 2025-12-18 19:01:13.180141: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 19:01:13.180443: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:13.200381: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:13.258392: embedding
> test_pipeop_isomap.R: 2025-12-18 19:01:13.279675: DONE
> test_pipeop_isomap.R: 2025-12-18 19:01:13.380101: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:13.381401: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:13.397254: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:13.595668: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:13.633691: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 19:01:13.634153: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:13.691819: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:14.017689: embedding
> test_pipeop_isomap.R: 2025-12-18 19:01:14.031577: DONE
> test_pipeop_isomap.R: 2025-12-18 19:01:14.210941: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:14.211245: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:14.218402: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:14.24678: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:14.279972: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 19:01:14.28042: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:14.312744: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:14.383218: embedding
> test_pipeop_isomap.R: 2025-12-18 19:01:14.384416: DONE
> test_pipeop_isomap.R: 2025-12-18 19:01:14.571124: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:14.571415: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:14.587061: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:14.611333: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:14.680379: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 19:01:14.680824: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:14.700408: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:14.778398: embedding
> test_pipeop_isomap.R: 2025-12-18 19:01:14.779532: DONE
> test_pipeop_isomap.R: 2025-12-18 19:01:14.884408: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:14.884718: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:14.892951: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:14.928531: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:14.979397: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 19:01:14.979837: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:15.012558: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:15.083801: embedding
> test_pipeop_isomap.R: 2025-12-18 19:01:15.084896: DONE
> test_pipeop_isomap.R: 2025-12-18 19:01:15.1779: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:15.178198: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:15.19121: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:15.216528: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:15.278499: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 19:01:15.288517: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:15.309491: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:15.375839: embedding
> test_pipeop_isomap.R: 2025-12-18 19:01:15.377114: DONE
> test_pipeop_isomap.R: 2025-12-18 19:01:15.47339: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:15.473692: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:15.488811: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:15.525379: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:15.637049: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 19:01:15.637481: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:15.662695: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:15.732553: embedding
> test_pipeop_isomap.R: 2025-12-18 19:01:15.73379: DONE
> test_pipeop_isomap.R: 2025-12-18 19:01:15.832781: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:15.834185: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:15.847981: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:15.875672: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:15.968992: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:15.969312: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:15.976242: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:16.006088: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 19:01:16.033782: Isomap START
> test_pipeop_isomap.R: 2025-12-18 19:01:16.034097: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 19:01:16.041552: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 19:01:16.078844: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [270s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-17 17:22:39.026281: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:39.027333: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:39.04128: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:39.064276: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:39.138704: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:39.139361: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:39.152498: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:39.175307: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:39.210176: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 17:22:39.210884: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:39.23175: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:39.281834: embedding
> test_pipeop_isomap.R: 2025-12-17 17:22:39.283832: DONE
> test_pipeop_isomap.R: 2025-12-17 17:22:39.323734: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 17:22:39.324408: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:39.347777: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:39.397628: embedding
> test_pipeop_isomap.R: 2025-12-17 17:22:39.399545: DONE
> test_pipeop_isomap.R: 2025-12-17 17:22:39.506244: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:39.506721: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:39.534621: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:39.651137: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:39.705826: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 17:22:39.706753: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:39.751866: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:39.986242: embedding
> test_pipeop_isomap.R: 2025-12-17 17:22:40.00501: DONE
> test_pipeop_isomap.R: 2025-12-17 17:22:40.24437: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:40.245102: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:40.256452: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:40.278377: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:40.328408: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 17:22:40.3295: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:40.351394: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:40.399475: embedding
> test_pipeop_isomap.R: 2025-12-17 17:22:40.401148: DONE
> test_pipeop_isomap.R: 2025-12-17 17:22:40.606316: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:40.606965: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:40.619454: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:40.636877: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:40.714229: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 17:22:40.715082: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:40.734571: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:40.771163: embedding
> test_pipeop_isomap.R: 2025-12-17 17:22:40.77228: DONE
> test_pipeop_isomap.R: 2025-12-17 17:22:40.878807: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:40.879481: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:40.890246: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:40.913591: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:40.981791: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 17:22:40.98266: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:41.089114: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:41.140296: embedding
> test_pipeop_isomap.R: 2025-12-17 17:22:41.142126: DONE
> test_pipeop_isomap.R: 2025-12-17 17:22:41.248191: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:41.248853: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:41.259827: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:41.281931: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:41.340798: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 17:22:41.34144: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:41.35767: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:41.408111: embedding
> test_pipeop_isomap.R: 2025-12-17 17:22:41.410075: DONE
> test_pipeop_isomap.R: 2025-12-17 17:22:41.517665: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:41.518297: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:41.530072: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:41.553019: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:41.621117: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 17:22:41.621998: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:41.658708: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:41.709271: embedding
> test_pipeop_isomap.R: 2025-12-17 17:22:41.711371: DONE
> test_pipeop_isomap.R: 2025-12-17 17:22:41.823687: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:41.824139: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:41.831896: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:41.849182: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:41.951894: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:41.952538: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:41.965427: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:41.987903: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 17:22:42.02184: Isomap START
> test_pipeop_isomap.R: 2025-12-17 17:22:42.0225: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 17:22:42.035506: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 17:22:42.058043: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.6750536')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13