Last updated on 2026-01-16 01:49:18 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 3 | 10 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [111s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-16 10:56:41.155955: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.156251: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.159414: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.165618: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.17742: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.177561: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.179676: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.185586: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.194005: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.1942: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.19876: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.213634: embedding
> test_pipeop_isomap.R: 2026-01-16 10:56:41.214017: DONE
> test_pipeop_isomap.R: 2026-01-16 10:56:41.22078: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.22093: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.225446: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.240251: embedding
> test_pipeop_isomap.R: 2026-01-16 10:56:41.240653: DONE
> test_pipeop_isomap.R: 2026-01-16 10:56:41.278262: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.278432: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.282794: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.316338: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.32468: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.324858: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.332391: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.408629: embedding
> test_pipeop_isomap.R: 2026-01-16 10:56:41.409912: DONE
> test_pipeop_isomap.R: 2026-01-16 10:56:41.44613: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.446281: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.448673: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.455027: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.463221: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.463407: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.468091: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.483049: embedding
> test_pipeop_isomap.R: 2026-01-16 10:56:41.483502: DONE
> test_pipeop_isomap.R: 2026-01-16 10:56:41.520499: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.520645: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.523297: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.529399: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.542341: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.542518: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.547098: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.561535: embedding
> test_pipeop_isomap.R: 2026-01-16 10:56:41.561996: DONE
> test_pipeop_isomap.R: 2026-01-16 10:56:41.580686: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.580838: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.583132: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.589132: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.610151: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.610457: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.615695: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.630678: embedding
> test_pipeop_isomap.R: 2026-01-16 10:56:41.631167: DONE
> test_pipeop_isomap.R: 2026-01-16 10:56:41.651716: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.651887: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.654419: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.660579: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.674034: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.674264: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.678878: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.693608: embedding
> test_pipeop_isomap.R: 2026-01-16 10:56:41.694035: DONE
> test_pipeop_isomap.R: 2026-01-16 10:56:41.714986: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.715213: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.717583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.723918: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.737214: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.737462: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.74211: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.757368: embedding
> test_pipeop_isomap.R: 2026-01-16 10:56:41.757964: DONE
> test_pipeop_isomap.R: 2026-01-16 10:56:41.784062: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.784199: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.786523: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.79308: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.812754: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.812895: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.815209: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.821461: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 10:56:41.827228: Isomap START
> test_pipeop_isomap.R: 2026-01-16 10:56:41.827343: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 10:56:41.82936: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 10:56:41.834567: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [331s/449s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-15 16:19:29.847886: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:29.848415: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:29.858607: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:29.883944: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:29.994072: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:29.994371: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:30.000919: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:30.055669: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:30.109439: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-15 16:19:30.109878: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:30.15828: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:30.270597: embedding
> test_pipeop_isomap.R: 2026-01-15 16:19:30.271704: DONE
> test_pipeop_isomap.R: 2026-01-15 16:19:30.331601: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-15 16:19:30.331914: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:30.36665: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:30.515587: embedding
> test_pipeop_isomap.R: 2026-01-15 16:19:30.516709: DONE
> test_pipeop_isomap.R: 2026-01-15 16:19:30.677117: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:30.677424: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:30.724129: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:30.96774: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:31.055151: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-15 16:19:31.055595: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:31.145504: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:31.663087: embedding
> test_pipeop_isomap.R: 2026-01-15 16:19:31.666683: DONE
> test_pipeop_isomap.R: 2026-01-15 16:19:31.963965: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:31.964247: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:31.982534: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:32.035619: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:32.09332: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-15 16:19:32.093741: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:32.133558: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:32.245029: embedding
> test_pipeop_isomap.R: 2026-01-15 16:19:32.246151: DONE
> test_pipeop_isomap.R: 2026-01-15 16:19:32.506409: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:32.524153: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:32.530865: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:32.573881: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:32.666743: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-15 16:19:32.681196: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:32.733308: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:32.836752: embedding
> test_pipeop_isomap.R: 2026-01-15 16:19:32.837822: DONE
> test_pipeop_isomap.R: 2026-01-15 16:19:32.984471: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:32.984771: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:32.991728: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:33.058945: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:33.167134: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-15 16:19:33.167563: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:33.205939: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:33.318171: embedding
> test_pipeop_isomap.R: 2026-01-15 16:19:33.319292: DONE
> test_pipeop_isomap.R: 2026-01-15 16:19:33.480403: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:33.480701: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:33.511065: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:33.546069: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:33.63901: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-15 16:19:33.639467: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:33.674751: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:33.784543: embedding
> test_pipeop_isomap.R: 2026-01-15 16:19:33.785826: DONE
> test_pipeop_isomap.R: 2026-01-15 16:19:33.956517: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:33.956824: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:33.986737: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:34.037035: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:34.167617: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-15 16:19:34.191245: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:34.236612: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:34.327548: embedding
> test_pipeop_isomap.R: 2026-01-15 16:19:34.340786: DONE
> test_pipeop_isomap.R: 2026-01-15 16:19:34.502398: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:34.502712: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:34.523369: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:34.557055: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:34.744301: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:34.7446: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:34.751282: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:34.80684: Classical Scaling
> test_pipeop_isomap.R: 2026-01-15 16:19:34.858549: Isomap START
> test_pipeop_isomap.R: 2026-01-15 16:19:34.858853: constructing knn graph
> test_pipeop_isomap.R: 2026-01-15 16:19:34.878284: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-15 16:19:34.918656: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [304s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-13 08:41:20.362144: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.363272: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.378263: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.399997: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:20.476046: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.476791: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.490232: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.513253: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:20.562892: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.563861: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.592648: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.648682: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:20.650832: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:20.703491: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.704282: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.728654: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.778332: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:20.780168: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:20.903257: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.903948: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.925685: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.048574: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:21.11836: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:21.119362: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:21.177825: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.417464: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:21.423429: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:21.664976: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:21.665706: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:21.677052: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.698993: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:21.753646: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:21.754913: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:21.777892: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.825633: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:21.827413: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:22.049494: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.050115: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.061357: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.086868: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:22.17783: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.179136: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.222526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.275889: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:22.277892: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:22.416591: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.417235: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.42788: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.450468: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:22.528851: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.529866: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.549407: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.594044: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:22.596101: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:22.708975: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.709602: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.71999: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.742911: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:22.812856: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.813732: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.835555: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.887232: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:22.889139: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:23.043632: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.044395: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.058142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.081035: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:23.164365: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.165408: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.191977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.241205: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:23.243225: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:23.390244: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.390759: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.400814: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.418861: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:23.546148: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.546843: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.559675: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.582483: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:23.612881: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.613325: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.623472: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.646108: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13