CRAN Package Check Results for Maintainer Robrecht Cannoodt <rcannood at gmail.com>

CRAN Package Check Results for Maintainer ‘Robrecht Cannoodt <rcannood at gmail.com>’

Last updated on 2025-05-09 01:50:45 CEST.

Package	NOTE	OK
anndata	13
babelwhale	2	11
diffusionMap	2	11
dyndimred	5	8
dyngen	13
dynparam	5	8
dynutils	6	7
dynwrap	2	11
funkyheatmap		13
GillespieSSA		13
GillespieSSA2	4	9
incgraph		13
lmds	7	6
princurve	2	11
qsub	2	11
SCORPIUS	13

Package anndata

Current CRAN status: NOTE: 13

Version: 0.7.5.6
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Philipp Angerer [ccp] (<https://orcid.org/0000-0002-0369-2888>, flying-sheep), Alex Wolf [ccp] (<https://orcid.org/0000-0002-8760-7838>, falexwolf), Isaac Virshup [ccp] (ivirshup), Sergei Rybakov [ccp] (Koncopd), Robrecht Cannoodt [aut, cre, cph] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’ Authors@R: ‘Philipp Angerer [ccp] (ORCID: <https://orcid.org/0000-0002-0369-2888>, github: flying-sheep), Alex Wolf [ccp] (ORCID: <https://orcid.org/0000-0002-8760-7838>, github: falexwolf), Isaac Virshup [ccp] (github: ivirshup), Sergei Rybakov [ccp] (github: Koncopd), Robrecht Cannoodt [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.7.5.6
Check: Rd files
Result: NOTE checkRd: (-1) concat.Rd:35: Lost braces; missing escapes or markup? 35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.} | ^ checkRd: (-1) concat.Rd:35: Lost braces 35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.} | ^ checkRd: (-1) concat.Rd:35: Lost braces 35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package babelwhale

Current CRAN status: NOTE: 2, OK: 11

Version: 1.2.0
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter), Joel Nitta [aut] (<https://orcid.org/0000-0003-4719-7472>, joelnitta)’ Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter), Joel Nitta [aut] (ORCID: <https://orcid.org/0000-0003-4719-7472>, github: joelnitta)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package diffusionMap

Current CRAN status: NOTE: 2, OK: 11

Version: 1.2.0
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Joseph Richards [aut] (joeyrichar), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’ Authors@R: ‘Joseph Richards [aut] (github: joeyrichar), Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package dyndimred

Current CRAN status: NOTE: 5, OK: 8

Version: 1.0.4
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’ Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.4
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘lle’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.4
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package dyngen

Current CRAN status: NOTE: 13

Version: 1.0.5
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.5
Check: Rd files
Result: NOTE checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup? 57 | By default, sampled from {-1, 1} with probabilities {.25, .75}. | ^ checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup? 57 | By default, sampled from {-1, 1} with probabilities {.25, .75}. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package dynparam

Current CRAN status: NOTE: 5, OK: 8

Version: 1.0.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.2
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’ Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package dynutils

Current CRAN status: NOTE: 6, OK: 7

Version: 1.0.11
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’ Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.11
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: mapdf.Rd: map Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package dynwrap

Current CRAN status: NOTE: 2, OK: 11

Version: 1.2.4
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’ Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package funkyheatmap

Current CRAN status: OK: 13

Package GillespieSSA

Current CRAN status: OK: 13

Package GillespieSSA2

Current CRAN status: NOTE: 4, OK: 9

Version: 0.3.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.3.0
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: doc 1.7Mb libs 3.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package incgraph

Current CRAN status: OK: 13

Package lmds

Current CRAN status: NOTE: 7, OK: 6

Version: 0.1.0
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’ Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.0
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘Matrix’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package princurve

Current CRAN status: NOTE: 2, OK: 11

Version: 2.1.6
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.1.6
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (HenrikBengtsson), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’ Authors@R: ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (ORCID: <https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (github: HenrikBengtsson), Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package qsub

Current CRAN status: NOTE: 2, OK: 11

Version: 1.1.3
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.1.3
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’ Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package SCORPIUS

Current CRAN status: NOTE: 13

Version: 1.0.9
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [ctb] (<https://orcid.org/0000-0002-7114-6248>, zouter)’ Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [ctb] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.9
Check: Rd files
Result: NOTE checkRd: (-1) reduce_dimensionality.Rd:19: Lost braces 19 | \item{ndim}{the maximum dimension of the space which the data are to be represented in; must be in {1, 2, \ldots, n-1}.} | ^ checkRd: (-1) ti_scorpius.Rd:18: Lost braces; missing escapes or markup? 18 | \item{distance_method}{A character string indicating which correlationcoefficient (or covariance) is to be computed. One of "pearson", "spearman" (default), or "cosine". Domain: {spearman, pearson, cosine}. Default: spearman. Format: character.} | ^ checkRd: (-1) ti_scorpius.Rd:30: Lost braces; missing escapes or markup? 30 | \item{smoother}{\code{principal_curve} parameter; choice of smoother. Domain: {smooth_spline, lowess, periodic_lowess}. Default: smooth_spline. Format: character.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64