Last updated on 2026-04-05 01:50:35 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| crctStepdown | 2 | 12 | |
| glmmrBase | 2 | 2 | 10 |
| glmmrOptim | 7 | 1 | 6 |
| marginme | 14 | ||
| rminqa | 14 | ||
| rts2 | 3 | 11 | |
| SparseChol | 14 |
Current CRAN status: NOTE: 2, OK: 12
Version: 0.5.2
Check: installed package size
Result: NOTE
installed size is 50.2Mb
sub-directories of 1Mb or more:
libs 50.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 2, NOTE: 2, OK: 10
Version: 1.3.0
Check: examples
Result: ERROR
Running examples in ‘glmmrBase-Ex.R’ failed
The error most likely occurred in:
> ### Name: Model
> ### Title: A GLMM Model
> ### Aliases: Model
>
> ### ** Examples
>
>
> ## ------------------------------------------------
> ## Method `Model$new`
> ## ------------------------------------------------
>
> ## Don't show:
> setParallel(FALSE)
> ## End(Don't show)
> # For more examples, see the examples for MCML.
>
> #create a data frame describing a cross-sectional parallel cluster
> #randomised trial
> df <- nelder(~(cl(10)*t(5)) > ind(10))
> df$int <- 0
> df[df$cl > 5, 'int'] <- 1
> mod <- Model$new(
+ formula = ~ factor(t) + int - 1 + (1|gr(cl)) + (1|gr(cl,t)),
+ data = df,
+ family = stats::gaussian()
+ )
>
> # We can also include the outcome data in the model initialisation.
> # For example, simulating data and creating a new object:
> df$y <- mod$sim_data()
>
> mod <- Model$new(
+ formula = y ~ factor(t) + int - 1 + (1|gr(cl)) + (1|gr(cl,t)),
+ data = df,
+ family = stats::gaussian()
+ )
>
> # Here we will specify a cohort study
> df <- nelder(~ind(20) * t(6))
> df$int <- 0
> df[df$t > 3, 'int'] <- 1
>
> des <- Model$new(
+ formula = ~ int + (1|gr(ind)),
+ data = df,
+ family = stats::poisson()
+ )
>
> # or with parameter values specified
>
> des <- Model$new(
+ formula = ~ int + (1|gr(ind)),
+ covariance = c(0.05),
+ mean = c(1,0.5),
+ data = df,
+ family = stats::poisson()
+ )
>
> #an example of a spatial grid with two time points
>
> df <- nelder(~ (x(10)*y(10))*t(2))
> spt_design <- Model$new(formula = ~ 1 + (1|ar0(t)*fexp(x,y)),
+ data = df,
+ family = stats::gaussian())
>
> ## ------------------------------------------------
> ## Method `Model$sim_data`
> ## ------------------------------------------------
>
> df <- nelder(~(cl(10)*t(5)) > ind(10))
> df$int <- 0
> df[df$cl > 5, 'int'] <- 1
> ## Don't show:
> setParallel(FALSE) # for the CRAN check
> ## End(Don't show)
> des <- Model$new(
+ formula = ~ factor(t) + int - 1 + (1|gr(cl)*ar0(t)),
+ covariance = c(0.05,0.8),
+ mean = c(rep(0,5),0.6),
+ data = df,
+ family = stats::binomial()
+ )
> ysim <- des$sim_data()
>
> ## ------------------------------------------------
> ## Method `Model$update_parameters`
> ## ------------------------------------------------
>
> ## Don't show:
> setParallel(FALSE) # for the CRAN check
> ## End(Don't show)
> df <- nelder(~(cl(10)*t(5)) > ind(10))
> df$int <- 0
> df[df$cl > 5, 'int'] <- 1
> des <- Model$new(
+ formula = ~ factor(t) + int - 1 + (1|gr(cl)*ar0(t)),
+ data = df,
+ family = stats::binomial()
+ )
> des$update_parameters(cov.pars = c(0.1,0.9))
>
> ## ------------------------------------------------
> ## Method `Model$power`
> ## ------------------------------------------------
>
> ## Don't show:
> setParallel(FALSE) # for the CRAN check
> ## End(Don't show)
> df <- nelder(~(cl(10)*t(5)) > ind(10))
> df$int <- 0
> df[df$cl > 5, 'int'] <- 1
> des <- Model$new(
+ formula = ~ factor(t) + int - 1 + (1|gr(cl)) + (1|gr(cl,t)),
+ covariance = c(0.05,0.1),
+ mean = c(rep(0,5),0.6),
+ data = df,
+ family = stats::gaussian(),
+ var_par = 1
+ )
> des$power() #power of 0.90 for the int parameter
Value SE Power
b_t1 0.0 0.1843909 0.025000
b_t2 0.0 0.1843909 0.025000
b_t3 0.0 0.1843909 0.025000
b_t4 0.0 0.1843909 0.025000
b_t5 0.0 0.1843909 0.025000
b_int 0.6 0.1897367 0.885379
>
> ## ------------------------------------------------
> ## Method `Model$MCML`
> ## ------------------------------------------------
>
> ## Not run:
> ##D # Simulated trial data example
> ##D data(SimTrial,package = "glmmrBase")
> ##D model <- Model$new(
> ##D formula = y ~ int + factor(t) - 1 + (1|gr(cl)*ar1(t)),
> ##D data = SimTrial,
> ##D family = gaussian()
> ##D )
> ##D glm3 <- model$MCML()
> ##D
> ##D # Salamanders data example
> ##D data(Salamanders,package="glmmrBase")
> ##D model <- Model$new(
> ##D mating~fpop:mpop-1+(1|gr(mnum))+(1|gr(fnum)),
> ##D data = Salamanders,
> ##D family = binomial()
> ##D )
> ##D
> ##D # use MCEM + REML with 500 sampling iterations
> ##D glm2 <- model$MCML(method = "mcem", iter.sampling = 500, reml = TRUE)
> ##D
> ##D # as an alternative, we will specify the variance parameters on the
> ##D # log scale and use a fast fitting algorithm
> ##D # we will use two newton-raphson steps, and Normal approximation posteriors with
> ##D # conjugate gradient descent
> ##D # the maximum number of iterations is increased as it takes 100-110 in this example
> ##D # we can also chain together the functions
> ##D glm3 <- Model$new(
> ##D mating~fpop:mpop-1+(1|grlog(mnum))+(1|grlog(fnum)),
> ##D data = Salamanders,
> ##D family = binomial()
> ##D )$MCML(method = "mcnr2", mcmc.pkg = "analytic", iter.sampling = 50, max.iter = 150)
> ##D
> ##D # Example using simulated data
> ##D #create example data with six clusters, five time periods, and five people per cluster-period
> ##D df <- nelder(~(cl(6)*t(5)) > ind(5))
> ##D # parallel trial design intervention indicator
> ##D df$int <- 0
> ##D df[df$cl > 3, 'int'] <- 1
> ##D # specify parameter values in the call for the data simulation below
> ##D des <- Model$new(
> ##D formula= ~ factor(t) + int - 1 +(1|gr(cl)*ar0(t)),
> ##D covariance = c(0.05,0.7),
> ##D mean = c(rep(0,5),0.2),
> ##D data = df,
> ##D family = gaussian()
> ##D )
> ##D ysim <- des$sim_data() # simulate some data from the model
> ##D fit1 <- des$MCML(y = ysim) # Default model fitting with SAEM
> ##D # use MCNR instead and stop when parameter values are within 1e-2 on successive iterations
> ##D fit2 <- des$MCML(y = ysim, method="mcnr",tol=1e-2,conv.criterion = 1)
> ##D
> ##D # Non-linear model fitting example using the example provided by nlmer in lme4
> ##D data(Orange, package = "lme4")
> ##D
> ##D # the lme4 example:
> ##D startvec <- c(Asym = 200, xmid = 725, scal = 350)
> ##D (nm1 <- lme4::nlmer(circumference ~ SSlogis(age, Asym, xmid, scal) ~ Asym|Tree,
> ##D Orange, start = startvec))
> ##D
> ##D Orange <- as.data.frame(Orange)
> ##D Orange$Tree <- as.numeric(Orange$Tree)
> ##D
> ##D # Here we can specify the model as a function.
> ##D
> ##D model <- Model$new(
> ##D circumference ~ Asym/(1 + exp((xmid - (age))/scal)) - 1 + (Asym|gr(Tree)),
> ##D data = Orange,
> ##D family = gaussian(),
> ##D mean = c(200,725,350),
> ##D covariance = c(500),
> ##D var_par = 50
> ##D )
> ##D
> ##D # for this example, we will use MCEM with adaptive MCMC sample sizes
> ##D
> ##D nfit <- model$MCML(method = "mcem.adapt", iter.sampling = 1000)
> ##D
> ##D summary(nfit)
> ##D summary(nm1)
> ##D
> ##D
> ## End(Not run)
>
> ## ------------------------------------------------
> ## Method `Model$fit`
> ## ------------------------------------------------
>
> # Simulated trial data example using REML
> data(SimTrial,package = "glmmrBase")
> fit1 <- Model$new(
+ formula = y ~ int + factor(t) - 1 + (1|grlog(cl)*ar0log(t)),
+ data = SimTrial,
+ family = gaussian()
+ )$fit(reml = TRUE)
Error: Exponent fail: nan^1.000000
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.2.1
Check: installed package size
Result: NOTE
installed size is 170.2Mb
sub-directories of 1Mb or more:
libs 168.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 1.2.1
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 1.3.0
Check: installed package size
Result: NOTE
installed size is 179.8Mb
sub-directories of 1Mb or more:
libs 178.6Mb
Flavor: r-oldrel-macos-x86_64
Version: 1.3.0
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavor: r-oldrel-macos-x86_64
Current CRAN status: ERROR: 7, NOTE: 1, OK: 6
Version: 0.3.7
Check: examples
Result: ERROR
Running examples in ‘glmmrOptim-Ex.R’ failed
The error most likely occurred in:
> ### Name: DesignSpace
> ### Title: A GLMM Design Space
> ### Aliases: DesignSpace
>
> ### ** Examples
>
>
> ## ------------------------------------------------
> ## Method `DesignSpace$new`
> ## ------------------------------------------------
>
> ## Don't show:
> glmmrBase::setParallel(FALSE) # for the CRAN check
> setParallelOptim(FALSE)
> ## End(Don't show)
> df <- nelder(~ ((int(2)*t(3)) > cl(3)) > ind(5))
> df$int <- df$int - 1
> des <- Model$new(formula = ~ int + factor(t) - 1+ (1|gr(cl)) + (1|gr(cl,t)),
+ covariance = c(0.04,0.01),
+ mean = rep(0,4),
+ data=df,
+ family=gaussian())
> ds <- DesignSpace$new(des)
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
> #add another design
> des2 <- Model$new(formula = ~ int + factor(t) - 1 + (1|gr(cl)) + (1|gr(cl,t)),
+ covariance = c(0.05,0.8),
+ mean = rep(0,4),
+ data=df,
+ family=gaussian())
> ds$add(des2)
> #report the size of the design
> ds$n()
n.designs n
2 90
> #we can access specific designs
> ds$show(2)$n()
[1] 90
> #and then remove it
> ds$remove(2)
> #or we could add them when we construct object
> ds <- DesignSpace$new(des,des2)
weights not provided, assigning equal weighting. weights can be changed manually in self$weights
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
> #we can specify weights
> ds <- DesignSpace$new(des,des2,weights=c(0.1,0.9))
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
> #and add experimental conditions
> ds <- DesignSpace$new(des,des2,experimental_condition = df$cl)
weights not provided, assigning equal weighting. weights can be changed manually in self$weights
>
> ## ------------------------------------------------
> ## Method `DesignSpace$add`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$remove`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$print`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$n`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$optimal`
> ## ------------------------------------------------
>
> ## Don't show:
> glmmrBase::setParallel(FALSE) # for the CRAN check
> setParallelOptim(FALSE)
> ## End(Don't show)
> df <- nelder(~(cl(6)*t(5)) > ind(5))
> df$int <- 0
> df[df$t >= df$cl, 'int'] <- 1
> des <- Model$new(
+ formula = ~ factor(t) + int - 1 + (1|gr(cl)),
+ covariance = c(0.05),
+ mean = c(rep(0,5),0.6),
+ data=df,
+ family=gaussian(),
+ var_par = 1
+ )
> ds <- DesignSpace$new(des)
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
>
> #find the optimal design of size 30 individuals using reverse greedy search
> # change algo=1 for local search, and algo = 2 for greedy search
> opt2 <- ds$optimal(30,C=list(c(rep(0,5),1)),algo=3)
Checking experimental condition correlations...
Experimental conditions correlated, using combinatorial search algorithms
Starting val: 0.0514286
REVERSE GREEDY SEARCH for design of size 30
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|Iteration 50| Size: 101 Current value: 0.053335
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 28**|
|Iteration 51| Size: 100 Current value: 0.053478
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 9**|
|Iteration 52| Size: 99 Current value: 0.0536387
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 3**|
|Iteration 53| Size: 98 Current value: 0.0538034
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 28**|
|Iteration 54| Size: 97 Current value: 0.053961
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 22**|
|Iteration 55| Size: 96 Current value: 0.054132
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 28**|
|Iteration 56| Size: 95 Current value: 0.0543156
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 3**|
|Iteration 57| Size: 94 Current value: 0.0544871
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 3**|
|Iteration 58| Size: 93 Current value: 0.0546878
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 28**|
|Iteration 59| Size: 92 Current value: 0.0548731
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 20**|
|Iteration 60| Size: 91 Current value: 0.0550862
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 11**|
|Iteration 61| Size: 90 Current value: 0.055301
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 9**|
|Iteration 62| Size: 89 Current value: 0.0555306
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 3**|
|Iteration 63| Size: 88 Current value: 0.0557633
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Removing: 28**|
|Iteration 64| Size: 87 Current value: 0.0559802
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 22**|
|Iteration 65| Size: 86 Current value: 0.0562282
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Removing: 11**|
|Iteration 66| Size: 85 Current value: 0.0565218
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Removing: 20**|
|Iteration 67| Size: 84 Current value: 0.0568186
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Removing: 11**|
|Iteration 68| Size: 83 Current value: 0.0571966
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Removing: 20**|
|Iteration 69| Size: 82 Current value: 0.0575798
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|Iteration 70| Size: 81 Current value: 0.0580409
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|Iteration 71| Size: 80 Current value: 0.0584974
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|Iteration 72| Size: 79 Current value: 0.0589809
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|Iteration 73| Size: 78 Current value: 0.0594449
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|Iteration 74| Size: 77 Current value: 0.059977
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|Iteration 75| Size: 76 Current value: 0.0604997
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|Iteration 76| Size: 75 Current value: 0.0610161
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|Iteration 77| Size: 74 Current value: 0.0615941
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|Iteration 78| Size: 73 Current value: 0.0621474
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|Iteration 79| Size: 72 Current value: 0.0627212
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|Iteration 80| Size: 71 Current value: 0.063351
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|Iteration 81| Size: 70 Current value: 0.0639731
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|Iteration 82| Size: 69 Current value: 0.0646419
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|Iteration 83| Size: 68 Current value: 0.065274
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|Iteration 84| Size: 67 Current value: 0.0660216
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|Iteration 85| Size: 66 Current value: 0.0667205
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|Iteration 86| Size: 65 Current value: 0.0675351
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|Iteration 87| Size: 64 Current value: 0.0682604
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Removing: 29**|
|Iteration 88| Size: 63 Current value: 0.0691035
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|Iteration 89| Size: 62 Current value: 0.0698716
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|Iteration 90| Size: 61 Current value: 0.0708093
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Removing: 8**|
|Iteration 91| Size: 60 Current value: 0.0716751
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Removing: 2**|
|Iteration 92| Size: 59 Current value: 0.0726835
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|Iteration 93| Size: 58 Current value: 0.0736193
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Removing: 29**|
|Iteration 94| Size: 57 Current value: 0.0746459
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|Iteration 95| Size: 56 Current value: 0.0756742
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Removing: 23**|
|Iteration 96| Size: 55 Current value: 0.0768911
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|Iteration 97| Size: 54 Current value: 0.0779958
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Removing: 23**|
|Iteration 98| Size: 53 Current value: 0.079413
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Removing: 8**|
|Iteration 99| Size: 52 Current value: 0.0806647
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Removing: 1**|
|Iteration 100| Size: 51 Current value: 0.0822442
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Removing: 6**|
|Iteration 101| Size: 50 Current value: 0.0836054
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Removing: 8**|
|Iteration 102| Size: 49 Current value: 0.0853007
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Removing: 23**|
|Iteration 103| Size: 48 Current value: 0.086821
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Removing: 25**|
|Iteration 104| Size: 47 Current value: 0.0885851
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Removing: 30**|
|Iteration 105| Size: 46 Current value: 0.0901082
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Removing: 25**|
|Iteration 106| Size: 45 Current value: 0.0922317
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Removing: 30**|
|Iteration 107| Size: 44 Current value: 0.0939614
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Removing: 1**|
|Iteration 108| Size: 43 Current value: 0.0962726
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|Iteration 109| Size: 42 Current value: 0.0981587
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|Iteration 110| Size: 41 Current value: 0.10073
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|Iteration 111| Size: 40 Current value: 0.102972
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|Iteration 112| Size: 39 Current value: 0.105796
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|Iteration 113| Size: 38 Current value: 0.108263
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|Iteration 114| Size: 37 Current value: 0.111409
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|Iteration 115| Size: 36 Current value: 0.114165
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|Iteration 116| Size: 35 Current value: 0.117912
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|Iteration 117| Size: 34 Current value: 0.121012
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|Iteration 118| Size: 33 Current value: 0.125093
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|Iteration 119| Size: 32 Current value: 0.128099
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|Iteration 120| Size: 31 Current value: 0.13282
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Removing: 7**|
FINISHED REVERSE GREEDY SEARCH>
> #let the experimental condition be the cluster
> # these experimental conditions are independent of one another
> ds <- DesignSpace$new(des,experimental_condition = df$cl)
> # now find the optimal 4 clusters to include
> # approximately, finding the weights for each condition
> opt <- ds$optimal(4,C=list(c(rep(0,5),1)))
Checking experimental condition correlations...
Experimental conditions uncorrelated, using second-order cone program
Error in Rmosek::mosek(prob, opts) :
Unknown exported object to be built. Please use 'Rmosek::mosek_attachbuilder' to complete the installation of Rmosek.
Calls: <Anonymous> ... method(solve_via_data, CVXR::Mosek_Solver) -> <Anonymous>
Execution halted
Flavors: r-devel-linux-x86_64-fedora-gcc, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.3.7
Check: examples
Result: ERROR
Running examples in ‘glmmrOptim-Ex.R’ failed
The error most likely occurred in:
> ### Name: DesignSpace
> ### Title: A GLMM Design Space
> ### Aliases: DesignSpace
>
> ### ** Examples
>
>
> ## ------------------------------------------------
> ## Method `DesignSpace$new`
> ## ------------------------------------------------
>
> ## Don't show:
> glmmrBase::setParallel(FALSE) # for the CRAN check
> setParallelOptim(FALSE)
> ## End(Don't show)
> df <- nelder(~ ((int(2)*t(3)) > cl(3)) > ind(5))
> df$int <- df$int - 1
> des <- Model$new(formula = ~ int + factor(t) - 1+ (1|gr(cl)) + (1|gr(cl,t)),
+ covariance = c(0.04,0.01),
+ mean = rep(0,4),
+ data=df,
+ family=gaussian())
> ds <- DesignSpace$new(des)
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
> #add another design
> des2 <- Model$new(formula = ~ int + factor(t) - 1 + (1|gr(cl)) + (1|gr(cl,t)),
+ covariance = c(0.05,0.8),
+ mean = rep(0,4),
+ data=df,
+ family=gaussian())
> ds$add(des2)
> #report the size of the design
> ds$n()
n.designs n
2 90
> #we can access specific designs
> ds$show(2)$n()
[1] 90
> #and then remove it
> ds$remove(2)
> #or we could add them when we construct object
> ds <- DesignSpace$new(des,des2)
weights not provided, assigning equal weighting. weights can be changed manually in self$weights
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
> #we can specify weights
> ds <- DesignSpace$new(des,des2,weights=c(0.1,0.9))
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
> #and add experimental conditions
> ds <- DesignSpace$new(des,des2,experimental_condition = df$cl)
weights not provided, assigning equal weighting. weights can be changed manually in self$weights
>
> ## ------------------------------------------------
> ## Method `DesignSpace$add`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$remove`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$print`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$n`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$optimal`
> ## ------------------------------------------------
>
> ## Don't show:
> glmmrBase::setParallel(FALSE) # for the CRAN check
> setParallelOptim(FALSE)
> ## End(Don't show)
> df <- nelder(~(cl(6)*t(5)) > ind(5))
> df$int <- 0
> df[df$t >= df$cl, 'int'] <- 1
> des <- Model$new(
+ formula = ~ factor(t) + int - 1 + (1|gr(cl)),
+ covariance = c(0.05),
+ mean = c(rep(0,5),0.6),
+ data=df,
+ family=gaussian(),
+ var_par = 1
+ )
> ds <- DesignSpace$new(des)
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
>
> #find the optimal design of size 30 individuals using reverse greedy search
> # change algo=1 for local search, and algo = 2 for greedy search
> opt2 <- ds$optimal(30,C=list(c(rep(0,5),1)),algo=3)
Checking experimental condition correlations...
Experimental conditions correlated, using combinatorial search algorithms
Starting val: 0.0514286
REVERSE GREEDY SEARCH for design of size 30
|Iteration 1| Size: 150 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 21**|
|Iteration 2| Size: 149 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 21**|
|Iteration 3| Size: 148 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 10**|
|Iteration 4| Size: 147 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 10**|
|Iteration 5| Size: 146 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 10**|
|Iteration 6| Size: 145 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 10**|
|Iteration 7| Size: 144 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 10**|
|Iteration 8| Size: 143 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 21**|
|Iteration 9| Size: 142 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 21**|
|Iteration 10| Size: 141 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 21**|
|Iteration 11| Size: 140 Current value: 0.0514286
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 4**|
|Iteration 12| Size: 139 Current value: 0.0514372
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 27**|
|Iteration 13| Size: 138 Current value: 0.0514459
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 27**|
|Iteration 14| Size: 137 Current value: 0.0514556
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 4**|
|Iteration 15| Size: 136 Current value: 0.0514653
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 4**|
|Iteration 16| Size: 135 Current value: 0.0514763
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 27**|
|Iteration 17| Size: 134 Current value: 0.0514874
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 27**|
|Iteration 18| Size: 133 Current value: 0.0515
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 4**|
|Iteration 19| Size: 132 Current value: 0.0515127
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 4**|
|Iteration 20| Size: 131 Current value: 0.0515272
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 27**|
|Iteration 21| Size: 130 Current value: 0.0515419
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 22| Size: 129 Current value: 0.0515716
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 23| Size: 128 Current value: 0.0516018
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 24| Size: 127 Current value: 0.051634
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 25| Size: 126 Current value: 0.0516659
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 26| Size: 125 Current value: 0.0516981
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 27| Size: 124 Current value: 0.0517301
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 28| Size: 123 Current value: 0.0517639
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 29| Size: 122 Current value: 0.0517978
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 30| Size: 121 Current value: 0.0518316
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 31| Size: 120 Current value: 0.0518656
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 32| Size: 119 Current value: 0.0519012
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 33| Size: 118 Current value: 0.0519373
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 34| Size: 117 Current value: 0.0519728
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 35| Size: 116 Current value: 0.0520092
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 36| Size: 115 Current value: 0.0520466
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 37| Size: 114 Current value: 0.0520849
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 38| Size: 113 Current value: 0.0521225
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 39| Size: 112 Current value: 0.0521615
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 40| Size: 111 Current value: 0.0522007
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 41| Size: 110 Current value: 0.0522413
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 42| Size: 109 Current value: 0.0523324
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 43| Size: 108 Current value: 0.0524252
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 44| Size: 107 Current value: 0.0525314
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 45| Size: 106 Current value: 0.0526397
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 46| Size: 105 Current value: 0.0527649
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 47| Size: 104 Current value: 0.0528931
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 48| Size: 103 Current value: 0.0530384
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 49| Size: 102 Current value: 0.0531844
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 50| Size: 101 Current value: 0.053335
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 51| Size: 100 Current value: 0.053478
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 52| Size: 99 Current value: 0.0536387
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 53| Size: 98 Current value: 0.0538034
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 54| Size: 97 Current value: 0.053961
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 55| Size: 96 Current value: 0.054132
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 56| Size: 95 Current value: 0.0543156
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 57| Size: 94 Current value: 0.0544871
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 58| Size: 93 Current value: 0.0546878
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 59| Size: 92 Current value: 0.0548731
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 60| Size: 91 Current value: 0.0550862
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 61| Size: 90 Current value: 0.055301
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 62| Size: 89 Current value: 0.0555306
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 63| Size: 88 Current value: 0.0557633
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 64| Size: 87 Current value: 0.0559802
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 65| Size: 86 Current value: 0.0562282
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 66| Size: 85 Current value: 0.0565218
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 67| Size: 84 Current value: 0.0568186
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 68| Size: 83 Current value: 0.0571966
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 69| Size: 82 Current value: 0.0575798
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 70| Size: 81 Current value: 0.0580409
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 71| Size: 80 Current value: 0.0584974
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 72| Size: 79 Current value: 0.0589809
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 73| Size: 78 Current value: 0.0594449
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 74| Size: 77 Current value: 0.059977
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 75| Size: 76 Current value: 0.0604997
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 76| Size: 75 Current value: 0.0610161
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 77| Size: 74 Current value: 0.0615941
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 78| Size: 73 Current value: 0.0621474
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 79| Size: 72 Current value: 0.0627212
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 80| Size: 71 Current value: 0.063351
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 81| Size: 70 Current value: 0.0639731
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 82| Size: 69 Current value: 0.0646419
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 83| Size: 68 Current value: 0.065274
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 8**|
|Iteration 84| Size: 67 Current value: 0.0660216
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 23**|
|Iteration 85| Size: 66 Current value: 0.0667205
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 86| Size: 65 Current value: 0.0675351
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 87| Size: 64 Current value: 0.0682604
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 88| Size: 63 Current value: 0.0691035
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 89| Size: 62 Current value: 0.0698716
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 23**|
|Iteration 90| Size: 61 Current value: 0.0708093
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 8**|
|Iteration 91| Size: 60 Current value: 0.0716751
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 92| Size: 59 Current value: 0.0726835
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 93| Size: 58 Current value: 0.0736193
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 94| Size: 57 Current value: 0.0746459
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 95| Size: 56 Current value: 0.0756742
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 23**|
|Iteration 96| Size: 55 Current value: 0.0768911
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 8**|
|Iteration 97| Size: 54 Current value: 0.0779958
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 23**|
|Iteration 98| Size: 53 Current value: 0.079413
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 8**|
|Iteration 99| Size: 52 Current value: 0.0806647
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 1**|
|Iteration 100| Size: 51 Current value: 0.0822442
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 6**|
|Iteration 101| Size: 50 Current value: 0.0836054
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 8**|
|Iteration 102| Size: 49 Current value: 0.0853007
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 23**|
|Iteration 103| Size: 48 Current value: 0.086821
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 25**|
|Iteration 104| Size: 47 Current value: 0.0885851
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 30**|
|Iteration 105| Size: 46 Current value: 0.0901082
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 6**|
|Iteration 106| Size: 45 Current value: 0.0922317
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 1**|
|Iteration 107| Size: 44 Current value: 0.0939614
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 30**|
|Iteration 108| Size: 43 Current value: 0.0962726
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 25**|
|Iteration 109| Size: 42 Current value: 0.0981587
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 19**|
|Iteration 110| Size: 41 Current value: 0.10073
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 24**|
|Iteration 111| Size: 40 Current value: 0.102972
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 7**|
|Iteration 112| Size: 39 Current value: 0.105796
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 12**|
|Iteration 113| Size: 38 Current value: 0.108263
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 13**|
|Iteration 114| Size: 37 Current value: 0.111409
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 18**|
|Iteration 115| Size: 36 Current value: 0.114165
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 19**|
|Iteration 116| Size: 35 Current value: 0.117912
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 24**|
|Iteration 117| Size: 34 Current value: 0.121012
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 25**|
|Iteration 118| Size: 33 Current value: 0.125093
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 30**|
|Iteration 119| Size: 32 Current value: 0.128099
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 7**|
|Iteration 120| Size: 31 Current value: 0.13282
Calculating removals:
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************************************************
Removing: 12**|
FINISHED REVERSE GREEDY SEARCH>
> #let the experimental condition be the cluster
> # these experimental conditions are independent of one another
> ds <- DesignSpace$new(des,experimental_condition = df$cl)
> # now find the optimal 4 clusters to include
> # approximately, finding the weights for each condition
> opt <- ds$optimal(4,C=list(c(rep(0,5),1)))
Checking experimental condition correlations...
Experimental conditions uncorrelated, using second-order cone program
Error in Rmosek::mosek(prob, opts) :
Unknown exported object to be built. Please use 'Rmosek::mosek_attachbuilder' to complete the installation of Rmosek.
Calls: <Anonymous> ... method(solve_via_data, CVXR::Mosek_Solver) -> <Anonymous>
Execution halted
Flavors: r-devel-macos-arm64, r-release-macos-arm64
Version: 0.3.6
Check: examples
Result: ERROR
Running examples in 'glmmrOptim-Ex.R' failed
The error most likely occurred in:
> ### Name: DesignSpace
> ### Title: A GLMM Design Space
> ### Aliases: DesignSpace
>
> ### ** Examples
>
>
> ## ------------------------------------------------
> ## Method `DesignSpace$new`
> ## ------------------------------------------------
>
> ## Don't show:
> glmmrBase::setParallel(FALSE) # for the CRAN check
> setParallelOptim(FALSE)
> ## End(Don't show)
> df <- nelder(~ ((int(2)*t(3)) > cl(3)) > ind(5))
> df$int <- df$int - 1
> des <- Model$new(formula = ~ int + factor(t) - 1+ (1|gr(cl)) + (1|gr(cl,t)),
+ covariance = c(0.04,0.01),
+ mean = rep(0,4),
+ data=df,
+ family=gaussian())
> ds <- DesignSpace$new(des)
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
> #add another design
> des2 <- Model$new(formula = ~ int + factor(t) - 1 + (1|gr(cl)) + (1|gr(cl,t)),
+ covariance = c(0.05,0.8),
+ mean = rep(0,4),
+ data=df,
+ family=gaussian())
> ds$add(des2)
> #report the size of the design
> ds$n()
n.designs n
2 90
> #we can access specific designs
> ds$show(2)$n()
[1] 90
> #and then remove it
> ds$remove(2)
> #or we could add them when we construct object
> ds <- DesignSpace$new(des,des2)
weights not provided, assigning equal weighting. weights can be changed manually in self$weights
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
> #we can specify weights
> ds <- DesignSpace$new(des,des2,weights=c(0.1,0.9))
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
> #and add experimental conditions
> ds <- DesignSpace$new(des,des2,experimental_condition = df$cl)
weights not provided, assigning equal weighting. weights can be changed manually in self$weights
>
> ## ------------------------------------------------
> ## Method `DesignSpace$add`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$remove`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$print`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$n`
> ## ------------------------------------------------
>
> #See examples for constructing the class
>
> ## ------------------------------------------------
> ## Method `DesignSpace$optimal`
> ## ------------------------------------------------
>
> ## Don't show:
> glmmrBase::setParallel(FALSE) # for the CRAN check
> setParallelOptim(FALSE)
> ## End(Don't show)
> df <- nelder(~(cl(6)*t(5)) > ind(5))
> df$int <- 0
> df[df$t >= df$cl, 'int'] <- 1
> des <- Model$new(
+ formula = ~ factor(t) + int - 1 + (1|gr(cl)),
+ covariance = c(0.05),
+ mean = c(rep(0,5),0.6),
+ data=df,
+ family=gaussian(),
+ var_par = 1
+ )
> ds <- DesignSpace$new(des)
experimental condition not provided, assuming each observation is a separate experimental condition. experimental condition can be changed manually in self$experimental_condition
>
> #find the optimal design of size 30 individuals using reverse greedy search
> # change algo=1 for local search, and algo = 2 for greedy search
> opt2 <- ds$optimal(30,C=list(c(rep(0,5),1)),algo=3)
Checking experimental condition correlations...
Experimental conditions correlated, using combinatorial search algorithms
Starting val: 0.0514286
REVERSE GREEDY SEARCH for design of size 30
|Iteration 1| Size: 150 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 21**|
|Iteration 2| Size: 149 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 21**|
|Iteration 3| Size: 148 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 10**|
|Iteration 4| Size: 147 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 10**|
|Iteration 5| Size: 146 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 10**|
|Iteration 6| Size: 145 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 10**|
|Iteration 7| Size: 144 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 10**|
|Iteration 8| Size: 143 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 21**|
|Iteration 9| Size: 142 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 21**|
|Iteration 10| Size: 141 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 21**|
|Iteration 11| Size: 140 Current value: 0.0514286
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 4**|
|Iteration 12| Size: 139 Current value: 0.0514372
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 27**|
|Iteration 13| Size: 138 Current value: 0.0514459
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 27**|
|Iteration 14| Size: 137 Current value: 0.0514556
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 4**|
|Iteration 15| Size: 136 Current value: 0.0514653
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 4**|
|Iteration 16| Size: 135 Current value: 0.0514763
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 27**|
|Iteration 17| Size: 134 Current value: 0.0514874
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 27**|
|Iteration 18| Size: 133 Current value: 0.0515
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 4**|
|Iteration 19| Size: 132 Current value: 0.0515127
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 4**|
|Iteration 20| Size: 131 Current value: 0.0515272
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 27**|
|Iteration 21| Size: 130 Current value: 0.0515419
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 22| Size: 129 Current value: 0.0515716
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 23| Size: 128 Current value: 0.0516018
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 24| Size: 127 Current value: 0.051634
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 25| Size: 126 Current value: 0.0516659
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 26| Size: 125 Current value: 0.0516981
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 27| Size: 124 Current value: 0.0517301
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 28| Size: 123 Current value: 0.0517639
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 29| Size: 122 Current value: 0.0517978
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 30| Size: 121 Current value: 0.0518316
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 31| Size: 120 Current value: 0.0518656
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 32| Size: 119 Current value: 0.0519012
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 33| Size: 118 Current value: 0.0519373
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 34| Size: 117 Current value: 0.0519728
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 35| Size: 116 Current value: 0.0520092
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 36| Size: 115 Current value: 0.0520466
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 37| Size: 114 Current value: 0.0520849
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 26**|
|Iteration 38| Size: 113 Current value: 0.0521225
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 5**|
|Iteration 39| Size: 112 Current value: 0.0521615
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 15**|
|Iteration 40| Size: 111 Current value: 0.0522007
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 16**|
|Iteration 41| Size: 110 Current value: 0.0522413
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 42| Size: 109 Current value: 0.0523324
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 43| Size: 108 Current value: 0.0524252
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 44| Size: 107 Current value: 0.0525314
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 45| Size: 106 Current value: 0.0526397
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 46| Size: 105 Current value: 0.0527649
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 47| Size: 104 Current value: 0.0528931
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 48| Size: 103 Current value: 0.0530384
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 49| Size: 102 Current value: 0.0531844
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 50| Size: 101 Current value: 0.053335
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 51| Size: 100 Current value: 0.053478
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 52| Size: 99 Current value: 0.0536387
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 53| Size: 98 Current value: 0.0538034
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 54| Size: 97 Current value: 0.053961
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 55| Size: 96 Current value: 0.054132
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 56| Size: 95 Current value: 0.0543156
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 57| Size: 94 Current value: 0.0544871
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 58| Size: 93 Current value: 0.0546878
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 59| Size: 92 Current value: 0.0548731
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 60| Size: 91 Current value: 0.0550862
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 61| Size: 90 Current value: 0.055301
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 9**|
|Iteration 62| Size: 89 Current value: 0.0555306
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 3**|
|Iteration 63| Size: 88 Current value: 0.0557633
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 28**|
|Iteration 64| Size: 87 Current value: 0.0559802
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 22**|
|Iteration 65| Size: 86 Current value: 0.0562282
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 66| Size: 85 Current value: 0.0565218
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 67| Size: 84 Current value: 0.0568186
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 68| Size: 83 Current value: 0.0571966
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 69| Size: 82 Current value: 0.0575798
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 70| Size: 81 Current value: 0.0580409
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 71| Size: 80 Current value: 0.0584974
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 72| Size: 79 Current value: 0.0589809
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 73| Size: 78 Current value: 0.0594449
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 11**|
|Iteration 74| Size: 77 Current value: 0.059977
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 75| Size: 76 Current value: 0.0604997
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 76| Size: 75 Current value: 0.0610161
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 77| Size: 74 Current value: 0.0615941
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 78| Size: 73 Current value: 0.0621474
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 20**|
|Iteration 79| Size: 72 Current value: 0.0627212
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 80| Size: 71 Current value: 0.063351
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 81| Size: 70 Current value: 0.0639731
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 82| Size: 69 Current value: 0.0646419
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 83| Size: 68 Current value: 0.065274
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 8**|
|Iteration 84| Size: 67 Current value: 0.0660216
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 23**|
|Iteration 85| Size: 66 Current value: 0.0667205
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 86| Size: 65 Current value: 0.0675351
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 87| Size: 64 Current value: 0.0682604
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 88| Size: 63 Current value: 0.0691035
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 89| Size: 62 Current value: 0.0698716
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 23**|
|Iteration 90| Size: 61 Current value: 0.0708093
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 8**|
|Iteration 91| Size: 60 Current value: 0.0716751
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 2**|
|Iteration 92| Size: 59 Current value: 0.0726835
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 17**|
|Iteration 93| Size: 58 Current value: 0.0736193
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 29**|
|Iteration 94| Size: 57 Current value: 0.0746459
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 14**|
|Iteration 95| Size: 56 Current value: 0.0756742
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 23**|
|Iteration 96| Size: 55 Current value: 0.0768911
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 8**|
|Iteration 97| Size: 54 Current value: 0.0779958
Calculating removals:
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
Removing: 23**|
|Iteration 98| Size: 53 Current value: 0.079413
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 8**|
|Iteration 99| Size: 52 Current value: 0.0806647
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 1**|
|Iteration 100| Size: 51 Current value: 0.0822442
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 6**|
|Iteration 101| Size: 50 Current value: 0.0836054
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 8**|
|Iteration 102| Size: 49 Current value: 0.0853007
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 23**|
|Iteration 103| Size: 48 Current value: 0.086821
Calculating removals:
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Removing: 25**|
|Iteration 104| Size: 47 Current value: 0.0885851
Calculating removals:
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Removing: 30**|
|Iteration 105| Size: 46 Current value: 0.0901082
Calculating removals:
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Removing: 25**|
|Iteration 106| Size: 45 Current value: 0.0922317
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 30**|
|Iteration 107| Size: 44 Current value: 0.0939614
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 1**|
|Iteration 108| Size: 43 Current value: 0.0962726
Calculating removals:
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Removing: 6**|
|Iteration 109| Size: 42 Current value: 0.0981587
Calculating removals:
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[----|----|----|----|----|----|----|----|----|----|
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Removing: 7**|
|Iteration 110| Size: 41 Current value: 0.10073
Calculating removals:
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Removing: 12**|
|Iteration 111| Size: 40 Current value: 0.102972
Calculating removals:
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Removing: 19**|
|Iteration 112| Size: 39 Current value: 0.105796
Calculating removals:
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Removing: 24**|
|Iteration 113| Size: 38 Current value: 0.108263
Calculating removals:
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Removing: 13**|
|Iteration 114| Size: 37 Current value: 0.111409
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Removing: 18**|
|Iteration 115| Size: 36 Current value: 0.114165
Calculating removals:
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Removing: 24**|
|Iteration 116| Size: 35 Current value: 0.117912
Calculating removals:
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Removing: 19**|
|Iteration 117| Size: 34 Current value: 0.121012
Calculating removals:
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Removing: 25**|
|Iteration 118| Size: 33 Current value: 0.125093
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Removing: 30**|
|Iteration 119| Size: 32 Current value: 0.128099
Calculating removals:
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Removing: 12**|
|Iteration 120| Size: 31 Current value: 0.13282
Calculating removals:
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Removing: 7**|
FINISHED REVERSE GREEDY SEARCH>
> #let the experimental condition be the cluster
> # these experimental conditions are independent of one another
> ds <- DesignSpace$new(des,experimental_condition = df$cl)
> # now find the optimal 4 clusters to include
> # approximately, finding the weights for each condition
> opt <- ds$optimal(4,C=list(c(rep(0,5),1)))
Checking experimental condition correlations...
Experimental conditions uncorrelated, using second-order cone program
Error: 'solve' is not an exported object from 'namespace:CVXR'
Execution halted
Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.3.6
Check: installed package size
Result: NOTE
installed size is 45.7Mb
sub-directories of 1Mb or more:
libs 45.5Mb
Flavor: r-oldrel-macos-arm64
Version: 0.3.7
Check: installed package size
Result: NOTE
installed size is 46.7Mb
sub-directories of 1Mb or more:
libs 46.4Mb
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: NOTE: 3, OK: 11
Version: 0.10.2
Check: installed package size
Result: NOTE
installed size is 110.6Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 108.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.2
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 14