Last updated on 2026-01-30 02:50:24 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/518s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.546, system: 0.040, elapsed: 4.147 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.613, system: 0.056, elapsed: 23.780 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.019, elapsed: 1.234 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.135, system: 0.919, elapsed: 180.770 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.005, elapsed: 0.689 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.292, system: 1.062, elapsed: 212.259 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.607, system: 0.036, elapsed: 6.325 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.631, system: 0.071, elapsed: 30.149 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.016, elapsed: 1.290 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.027, system: 0.807, elapsed: 113.016 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.003, elapsed: 0.180 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.230, system: 0.956, elapsed: 152.590 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.837, system: 0.055, elapsed: 1.941 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.744, system: 0.143, elapsed: 14.800 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.315, system: 0.018, elapsed: 0.756 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.706, system: 0.764, elapsed: 88.633 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.003, elapsed: 0.191 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.229, system: 0.339, elapsed: 1.020 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.704, system: 1.369, elapsed: 108.297 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.581, system: 0.036, elapsed: 1.855 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.666, system: 0.037, elapsed: 10.303 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.014, elapsed: 0.299 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.413, system: 0.579, elapsed: 9.198 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.003, elapsed: 0.187 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 12.155, system: 0.675, elapsed: 12.762 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.949, system: 1.375, elapsed: 35.383 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/524s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.650, system: 0.044, elapsed: 4.660 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.570, system: 0.069, elapsed: 24.454 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.018, elapsed: 1.247 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.887, system: 0.930, elapsed: 182.135 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.425 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.060, system: 1.086, elapsed: 214.365 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.557, system: 0.032, elapsed: 4.399 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.525, system: 0.068, elapsed: 26.237 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.017, elapsed: 1.197 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.840, system: 0.855, elapsed: 151.262 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.182 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.860, system: 0.995, elapsed: 184.549 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.572, system: 0.033, elapsed: 2.297 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.483, system: 0.083, elapsed: 14.290 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.014, elapsed: 0.739 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.426, system: 0.780, elapsed: 21.247 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.005, elapsed: 0.213 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.193, system: 0.291, elapsed: 0.963 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.709, system: 1.234, elapsed: 40.740 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.607, system: 0.030, elapsed: 2.001 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.530, system: 0.076, elapsed: 12.362 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.017, elapsed: 0.874 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.519, system: 0.673, elapsed: 41.815 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.005, elapsed: 0.298 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 12.424, system: 0.706, elapsed: 15.983 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.132, system: 1.530, elapsed: 74.080 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64