Last updated on 2026-01-29 01:52:38 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [105s/581s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.764, system: 0.082, elapsed: 3.521 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.765, system: 0.255, elapsed: 15.506 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.021, elapsed: 1.160 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.635, system: 0.747, elapsed: 24.024 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.010, elapsed: 0.239 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.137, system: 1.143, elapsed: 45.433 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.692, system: 0.074, elapsed: 2.220 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.941, system: 0.306, elapsed: 27.859 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.227, system: 0.017, elapsed: 1.236 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.168, system: 0.909, elapsed: 180.747 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.004, elapsed: 0.465 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.776, system: 1.337, elapsed: 213.512 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.516, system: 0.030, elapsed: 3.699 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.527, system: 0.068, elapsed: 30.553 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.316, system: 0.017, elapsed: 1.736 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.112, system: 0.971, elapsed: 181.943 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.007, elapsed: 0.518 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.269, system: 0.344, elapsed: 2.066 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.602, system: 1.477, elapsed: 222.333 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.530, system: 0.036, elapsed: 4.360 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.558, system: 0.064, elapsed: 25.641 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.015, elapsed: 1.177 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.581, system: 0.805, elapsed: 40.792 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.006, elapsed: 0.196 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 14.533, system: 1.029, elapsed: 16.804 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 34.311, system: 1.989, elapsed: 90.598 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [101s/486s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.589, system: 0.040, elapsed: 5.918 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.559, system: 0.061, elapsed: 34.014 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.018, elapsed: 1.276 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.892, system: 0.992, elapsed: 181.138 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.006, elapsed: 0.476 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.008, system: 1.140, elapsed: 224.865 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.580, system: 0.042, elapsed: 4.576 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.510, system: 0.076, elapsed: 25.953 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.017, elapsed: 1.197 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.130, system: 0.859, elapsed: 120.343 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.010, elapsed: 0.323 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.161, system: 1.026, elapsed: 153.674 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.742, system: 0.063, elapsed: 2.035 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.599, system: 0.130, elapsed: 11.355 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.211, system: 0.014, elapsed: 0.514 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.580, system: 0.681, elapsed: 39.167 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.005, elapsed: 0.190 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.218, system: 0.330, elapsed: 0.920 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.239, system: 1.263, elapsed: 54.984 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.709, system: 0.048, elapsed: 1.705 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.571, system: 0.095, elapsed: 11.196 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.014, elapsed: 0.276 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.787, system: 0.816, elapsed: 8.706 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.002, elapsed: 0.164 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.531, system: 0.608, elapsed: 16.790 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.839, system: 1.624, elapsed: 39.550 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64