Last updated on 2025-11-14 01:52:21 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/157s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.749, system: 0.077, elapsed: 2.778 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.768, system: 0.237, elapsed: 15.194 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.204, system: 0.020, elapsed: 0.362 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.133, system: 0.274, elapsed: 6.510 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.008, elapsed: 0.259 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.614, system: 0.648, elapsed: 25.963 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.765, system: 0.078, elapsed: 2.445 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.745, system: 0.275, elapsed: 11.456 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.018, elapsed: 0.242 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.209, system: 0.295, elapsed: 5.293 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.009, elapsed: 0.227 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.683, system: 0.715, elapsed: 20.434 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.664, system: 0.062, elapsed: 1.909 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.735, system: 0.249, elapsed: 16.584 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.011, elapsed: 0.311 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.003, system: 0.221, elapsed: 8.183 seconds]
Computing values for grid cells...
... done. [user: 0.198, system: 0.022, elapsed: 0.489 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.310, system: 0.311, elapsed: 2.038 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.742, system: 0.921, elapsed: 30.577 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.590, system: 0.038, elapsed: 3.998 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.668, system: 0.066, elapsed: 29.614 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.012, elapsed: 0.680 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.093, system: 0.188, elapsed: 12.243 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.004, elapsed: 0.540 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.109, system: 0.491, elapsed: 22.912 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.518, system: 0.820, elapsed: 71.951 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/164s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.644, system: 0.042, elapsed: 2.812 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.493, system: 0.053, elapsed: 17.288 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.014, elapsed: 0.422 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.750, system: 0.185, elapsed: 6.818 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.008, elapsed: 0.318 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.845, system: 0.332, elapsed: 28.681 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.587, system: 0.031, elapsed: 2.941 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.525, system: 0.068, elapsed: 18.441 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.013, elapsed: 0.396 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.781, system: 0.183, elapsed: 6.948 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.264 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.826, system: 0.329, elapsed: 30.069 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.574, system: 0.030, elapsed: 2.782 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.536, system: 0.054, elapsed: 24.011 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.012, elapsed: 0.546 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.771, system: 0.174, elapsed: 10.661 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.004, elapsed: 0.540 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.137, system: 0.263, elapsed: 2.045 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.057, system: 0.563, elapsed: 42.252 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.633, system: 0.034, elapsed: 3.712 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.744, system: 0.096, elapsed: 18.602 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.013, elapsed: 0.429 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.887, system: 0.197, elapsed: 9.201 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.004, elapsed: 0.389 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.749, system: 0.482, elapsed: 19.229 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.058, system: 0.849, elapsed: 53.073 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64