Last updated on 2025-05-09 01:50:48 CEST.
| Package | WARN | NOTE | OK |
|---|---|---|---|
| GenomeAdmixR | 2 | 11 | |
| GUILDS | 13 | ||
| junctions | 13 | ||
| nLTT | 4 | 9 | |
| nodeSub | 1 | 12 | |
| simRestore | 13 | ||
| STEPCAM | 4 | 9 | |
| treestats | 2 | 11 |
Current CRAN status: WARN: 2, NOTE: 11
Version: 2.1.7
Check: C++ specification
Result: NOTE
Specified C++14: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.1.7
Check: Rd files
Result: NOTE
checkRd: (-1) simulate_admixture.Rd:36: Lost braces
36 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
checkRd: (-1) simulate_ancestry.Rd:49: Lost braces
49 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
checkRd: (-1) simulate_ancestry_migration.Rd:59: Lost braces
59 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
checkRd: (-1) simulate_sequence.Rd:51: Lost braces
51 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
checkRd: (-1) simulate_sequence_migration.Rd:58: Lost braces
58 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.1.7
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GenomeAdmixR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1.7
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘methods’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.1.7
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
D:/rtools45/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/14.2.0/include/c++/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long long unsigned int)' forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=]
See 'd:/Rcompile/CRANpkg/local/4.6/GenomeAdmixR.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 14.2.0'
Flavor: r-devel-windows-x86_64
Version: 2.1.7
Check: installed package size
Result: NOTE
installed size is 6.8Mb
sub-directories of 1Mb or more:
doc 2.0Mb
libs 4.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 4, OK: 9
Version: 1.4.9
Check: Rd files
Result: NOTE
checkRd: (-1) check_input_event_times.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) check_input_event_times.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) check_time_unit.Rd:12-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) check_time_unit.Rd:14-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) default_params_doc.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) default_params_doc.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nltt_diff_exact_brts.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nltt_diff_exact_brts.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nltt_diff_exact_brts.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nltt_diff_exact_brts.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nltt_diff_exact_extinct.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nltt_diff_exact_extinct.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nltt_diff_exact_extinct.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nltt_diff_exact_extinct.Rd:39-40: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64, r-patched-linux-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 1, OK: 12
Version: 1.2.8
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Thijs Janzen <thijsjanzen@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Thijs",
family = "Janzen",
role = c("aut", "cre"),
email = "thijsjanzen@gmail.com")
as necessary.
The BugReports field in DESCRIPTION has
https://github.com/thijsjanzen/nodeSub
which should likely be
https://github.com/thijsjanzen/nodeSub/issues
instead.
Flavor: r-devel-linux-x86_64-debian-clang
Current CRAN status: OK: 13
Current CRAN status: NOTE: 4, OK: 9
Version: 1.2
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Thijs Janzen <thijsjanzen@gmail.com>’
The Description field contains
<http://onlinelibrary.wiley.com/wol1/doi/10.1890/14-0454.1/abstract>
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
The BugReports field in DESCRIPTION has
https://github.com/thijsjanzen/STEPCAM
which should likely be
https://github.com/thijsjanzen/STEPCAM/issues
instead.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2
Check: Rd files
Result: NOTE
checkRd: (-1) STEPCAM_ABC.Rd:19: Lost braces
19 | \code{rows}{ every row corresponds to a different plot or community} \cr
| ^
checkRd: (-1) STEPCAM_ABC.Rd:20: Lost braces
20 | \code{columns}{ every column corresponds to a different species.} \cr
| ^
checkRd: (-1) STEPCAM_ABC.Rd:25: Lost braces
25 | \code{rows}{ every row corresponds to a different species} \cr
| ^
checkRd: (-1) STEPCAM_ABC.Rd:26: Lost braces
26 | \code{columns}{ the first column contains the name of the species, every consecutive column corresponds to a different trait} \cr
| ^
checkRd: (-1) plotSTEPCAM.Rd:16: Lost braces
16 | - \code{DA}{ a vector containing the posterior distribution for the parameter dispersal assembly} \cr
| ^
checkRd: (-1) plotSTEPCAM.Rd:17: Lost braces
17 | - \code{HF}{ a vector containing the posterior distribution for the parameter habitat filtering} \cr
| ^
checkRd: (-1) plotSTEPCAM.Rd:18: Lost braces
18 | - \code{LS}{ a vector containing the posterior distribution for the parameter limiting similarity} \cr
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64, r-patched-linux-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 1.70.5
Check: installed package size
Result: NOTE
installed size is 8.6Mb
sub-directories of 1Mb or more:
doc 3.1Mb
libs 5.0Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64