Last updated on 2026-01-14 02:52:46 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 4 | 9 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 4, OK: 9
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [322s/160s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-01-13 17:23:37.77802: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:37.778624: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:37.787319: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:37.80138: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:37.843398: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:37.843806: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:37.849311: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:37.863316: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:37.882941: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 17:23:37.886477: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:37.897698: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:37.929538: embedding
> test_pipeop_isomap.R: 2026-01-13 17:23:37.930625: DONE
> test_pipeop_isomap.R: 2026-01-13 17:23:37.950734: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 17:23:37.951154: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:37.965043: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:37.993842: embedding
> test_pipeop_isomap.R: 2026-01-13 17:23:37.99503: DONE
> test_pipeop_isomap.R: 2026-01-13 17:23:38.062881: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:38.063295: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:38.073606: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:38.149631: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:38.17595: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 17:23:38.176512: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:38.204795: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:38.377888: embedding
> test_pipeop_isomap.R: 2026-01-13 17:23:38.383657: DONE
> test_pipeop_isomap.R: 2026-01-13 17:23:38.510046: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:38.510476: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:38.518605: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:38.532788: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:38.574852: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 17:23:38.575484: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:38.588939: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:38.62146: embedding
> test_pipeop_isomap.R: 2026-01-13 17:23:38.622526: DONE
> test_pipeop_isomap.R: 2026-01-13 17:23:38.741477: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:38.741881: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:38.748605: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:38.762605: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:38.804985: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 17:23:38.805573: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:38.818387: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:38.850911: embedding
> test_pipeop_isomap.R: 2026-01-13 17:23:38.851987: DONE
> test_pipeop_isomap.R: 2026-01-13 17:23:38.92336: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:38.923817: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:38.930175: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:38.944052: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:38.989236: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 17:23:38.989815: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:39.489661: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:39.523511: embedding
> test_pipeop_isomap.R: 2026-01-13 17:23:39.524449: DONE
> test_pipeop_isomap.R: 2026-01-13 17:23:39.582466: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:39.58281: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:39.588976: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:39.602845: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:39.640097: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 17:23:39.641859: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:39.653113: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:39.685503: embedding
> test_pipeop_isomap.R: 2026-01-13 17:23:39.686535: DONE
> test_pipeop_isomap.R: 2026-01-13 17:23:39.747237: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:39.747628: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:39.753943: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:39.767873: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:39.809734: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 17:23:39.8103: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:39.822141: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:39.854605: embedding
> test_pipeop_isomap.R: 2026-01-13 17:23:39.855676: DONE
> test_pipeop_isomap.R: 2026-01-13 17:23:39.929681: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:39.931363: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:39.937594: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:39.951473: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:40.022821: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:40.023222: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:40.03031: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:40.044134: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 17:23:40.067685: Isomap START
> test_pipeop_isomap.R: 2026-01-13 17:23:40.068117: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 17:23:40.076335: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 17:23:40.089894: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.3683433')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [119s/71s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-14 09:55:45.632349: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:45.632766: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:45.636854: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:45.647267: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:45.669076: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:45.669323: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:45.672065: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:45.686991: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:45.705777: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-14 09:55:45.706059: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:45.71169: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:45.730557: embedding
> test_pipeop_isomap.R: 2026-01-14 09:55:45.731022: DONE
> test_pipeop_isomap.R: 2026-01-14 09:55:45.742712: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-14 09:55:45.742888: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:45.747606: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:45.773919: embedding
> test_pipeop_isomap.R: 2026-01-14 09:55:45.774823: DONE
> test_pipeop_isomap.R: 2026-01-14 09:55:45.835704: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:45.835843: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:45.840501: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:45.896679: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:45.911822: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-14 09:55:45.912015: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:45.922693: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.058662: embedding
> test_pipeop_isomap.R: 2026-01-14 09:55:46.063739: DONE
> test_pipeop_isomap.R: 2026-01-14 09:55:46.124479: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.124635: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.132194: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.139035: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:46.15846: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.158701: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.165254: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.18541: embedding
> test_pipeop_isomap.R: 2026-01-14 09:55:46.185859: DONE
> test_pipeop_isomap.R: 2026-01-14 09:55:46.261537: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.261709: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.264201: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.272899: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:46.290224: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.290436: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.295046: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.323225: embedding
> test_pipeop_isomap.R: 2026-01-14 09:55:46.323702: DONE
> test_pipeop_isomap.R: 2026-01-14 09:55:46.356282: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.35645: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.359005: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.371286: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:46.414747: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.415016: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.419836: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.443028: embedding
> test_pipeop_isomap.R: 2026-01-14 09:55:46.443633: DONE
> test_pipeop_isomap.R: 2026-01-14 09:55:46.478324: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.47849: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.487853: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.496164: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:46.51898: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.519204: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.524133: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.548865: embedding
> test_pipeop_isomap.R: 2026-01-14 09:55:46.549353: DONE
> test_pipeop_isomap.R: 2026-01-14 09:55:46.583677: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.583829: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.586172: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.601286: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:46.627351: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.627671: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.633661: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.655418: embedding
> test_pipeop_isomap.R: 2026-01-14 09:55:46.6624: DONE
> test_pipeop_isomap.R: 2026-01-14 09:55:46.697551: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.697718: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.700072: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.707999: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:46.746327: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.746494: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.748863: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.755294: Classical Scaling
> test_pipeop_isomap.R: 2026-01-14 09:55:46.766568: Isomap START
> test_pipeop_isomap.R: 2026-01-14 09:55:46.766694: constructing knn graph
> test_pipeop_isomap.R: 2026-01-14 09:55:46.768832: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-14 09:55:46.779577: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [323s/424s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-13 18:56:46.749551: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:46.750096: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:46.76134: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:46.860214: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:46.963204: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:46.963519: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:47.028021: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:47.059428: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:47.12352: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 18:56:47.123935: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:47.171238: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:47.260805: embedding
> test_pipeop_isomap.R: 2026-01-13 18:56:47.278439: DONE
> test_pipeop_isomap.R: 2026-01-13 18:56:47.338491: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 18:56:47.338801: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:47.3679: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:47.477856: embedding
> test_pipeop_isomap.R: 2026-01-13 18:56:47.479444: DONE
> test_pipeop_isomap.R: 2026-01-13 18:56:47.653482: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:47.653931: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:47.739957: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:47.969598: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:48.046922: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 18:56:48.047339: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:48.123989: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:48.749179: embedding
> test_pipeop_isomap.R: 2026-01-13 18:56:48.752803: DONE
> test_pipeop_isomap.R: 2026-01-13 18:56:49.044012: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:49.044287: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:49.074606: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:49.121662: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:49.175388: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 18:56:49.175807: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:49.207346: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:49.328582: embedding
> test_pipeop_isomap.R: 2026-01-13 18:56:49.32971: DONE
> test_pipeop_isomap.R: 2026-01-13 18:56:49.695908: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:49.696207: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:49.737162: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:49.783137: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:49.906725: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 18:56:49.907343: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:49.954496: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:50.109583: embedding
> test_pipeop_isomap.R: 2026-01-13 18:56:50.110711: DONE
> test_pipeop_isomap.R: 2026-01-13 18:56:50.283881: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:50.284162: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:50.302652: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:50.360649: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:50.456076: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 18:56:50.456487: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:50.510707: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:50.622631: embedding
> test_pipeop_isomap.R: 2026-01-13 18:56:50.623697: DONE
> test_pipeop_isomap.R: 2026-01-13 18:56:50.798574: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:50.798869: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:50.824368: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:50.918707: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:51.020751: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 18:56:51.021181: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:51.05504: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:51.160675: embedding
> test_pipeop_isomap.R: 2026-01-13 18:56:51.180869: DONE
> test_pipeop_isomap.R: 2026-01-13 18:56:51.315301: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:51.315597: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:51.323878: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:51.404059: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:51.485796: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 18:56:51.486232: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:51.520353: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:51.632044: embedding
> test_pipeop_isomap.R: 2026-01-13 18:56:51.633235: DONE
> test_pipeop_isomap.R: 2026-01-13 18:56:51.801877: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:51.802175: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:51.808902: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:51.855176: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:52.05487: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:52.055169: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:52.062025: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:52.1108: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 18:56:52.158065: Isomap START
> test_pipeop_isomap.R: 2026-01-13 18:56:52.158363: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 18:56:52.165163: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 18:56:52.220508: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [279s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-05 17:10:18.000803: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.001822: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.016234: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.038918: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:18.114544: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.115168: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.126832: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.14891: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:18.189564: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.190254: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.294737: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.335578: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:18.336862: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:18.38209: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.382775: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.403685: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.44051: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:18.441906: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:18.562249: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.562857: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.585138: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.690194: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:18.739394: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.740079: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.779494: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.980606: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:18.985685: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:19.204969: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.20559: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.215899: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.236987: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:19.289005: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.289876: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.307619: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.353702: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:19.355303: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:19.511482: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.511936: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.51863: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.533563: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:19.595101: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.596039: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.614963: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.666046: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:19.667642: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:19.781182: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.781789: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.799444: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.815658: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:19.881228: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.882259: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.900811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.937499: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:19.9387: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:20.04102: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.04162: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.067441: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.089866: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.169186: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.170107: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.186432: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.230027: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:20.231546: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:20.34159: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.342098: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.34929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.365845: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.41623: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.416922: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.442262: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.491627: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:20.493363: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:20.62114: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.621785: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.631884: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.649447: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.785893: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.786638: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.798355: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.819076: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.852864: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.85349: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.864854: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.897752: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13